Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 1e-15 >seq60 Length=331869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| | |||||| | || || || || || || || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||||||||| || || |||| | || ||||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || || || ||||| | |||||||||||||| ||||| | || | || ||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| | ||||| || || || ||||| |||||||| | ||||||||||| | | Sbjct 158154 TCAAATTTTTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACACATCAAAGTC 158213 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || || ||| || |||| |||||| || |||||||||||||| || || ||| || Sbjct 158214 CAATCAGAATCAGTCTCAACTCTTTTCATGAATAGATCAGGAATCCAGAGGGC-ATAGAA 158272 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 |||||| | | ||| | |||||| ||| |||||| || ||| | |||||| Sbjct 158273 TAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGAGGAA 158326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||||||||| || ||||| || ||||| || |||| ||| | ||||| | ||||| Sbjct 157794 TGCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGATGAATATTCAACGATCTC 157853 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 |||||| | ||| ||| ||||| ||||| | ||| |||||||||||||| ||||| Sbjct 157854 AGTGCACAAATTGGAACATTTGATCGTTCCCAGATTCTGTTGATTACTCTTCGAATTACA 157913 Query 53824 CGCATCCT 53831 ||||||| Sbjct 157914 TGCATCCT 157921 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 54850 ||||||||||| || | ||| |||||||| || |||||||||||||| ||||| | ||| Sbjct 159233 TTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGTA 159292 Query 54851 GTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 || ||||| |||| |||| |||| |||||||||| Sbjct 159293 GTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593688856253760