Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq534 122 9e-23 seq138 105 7e-18 seq520 104 2e-17 seq306 86.0 6e-12 >seq534 Length=97391 Score = 122 bits (134), Expect = 9e-23 Identities = 139/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 ||||| ||||||||| |||| ||||| ||| |||||| | | | |||| |||||| || Sbjct 38721 GGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGACACCATCGAGAACG-TCAAGGCTAA 38779 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | || || ||||| |||||| | |||||||| || | |||| ||| || || || Sbjct 38780 GATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAGAGATTGATCTTCGCTGGAAAGCA 38839 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || || | ||||| || |||||||||||||||||||| |||| || ||||| Sbjct 38840 GCTTGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCT 38899 Query 40896 AGTG 40899 ||| Sbjct 38900 GGTG 38903 >seq138 Length=243692 Score = 105 bits (116), Expect = 7e-18 Identities = 119/155 (77%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 117005 TGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 |||||||| | || ||| | || |||||| ||||| || | |||||||| |||||| Sbjct 113776 TGGATCGCTGACA-AGAAGTCGTCCTTCGCGGAGCGTCTCATCGCCTTCGCCTGCGTCGA 113834 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 |||| ||||||| |||||| ||||| ||||| || ||||| ||||| | || ||||| Sbjct 113835 GGGCATCTTCTTCTCGGGCTCGTTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCAT 113894 Query 117124 GCCCGGCCTGACT--TTCAGCAACGAGCTCATCTC 117156 |||||| || ||| ||| || ||||||||||| Sbjct 113895 GCCCGGACTCACTCATTC--GAATGAGCTCATCTC 113927 >seq520 Length=99801 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || |||||||||||| |||| ||||| || || Sbjct 58868 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTCGAGGTCGAGGCTTCC 58927 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| ||||| | || || Sbjct 58928 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCA 58986 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| |||| |||| ||| || Sbjct 58987 GCAGAGACTTATCTTCGCCGG 59007 >seq306 Length=152290 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| ||| | || | || |||||| ||| ||||| ||||||| ||||| ||| Sbjct 92830 TTCGCTGAGAGATTGATTGCATTCGCGTGCGTTGAGGGAATCTTCTTCTCGGGATCTTTT 92771 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACT--TTCAGCAACG 117146 |||||||| || ||||| |||||| | || ||||||||||| || ||| ||| || | Sbjct 92770 GCCGCCATTTTCTGGCTGAAGAAAAGAGGACTCATGCCCGGACTCACTCATTCG--AATG 92713 Query 117147 AGCTCATCTC 117156 |||||||||| Sbjct 92712 AGCTCATCTC 92703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190785661120