Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq88 102 7e-17 seq520 86.0 6e-12 >seq88 Length=301248 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || |||||||| ||||| || || | || || || || |||| ||||| || |||||| Sbjct 194422 TCTGCATGCCATGGCTCAAGATAGATAGCGAAAGCTCCGGGTCGTTTATTTCCACCCTGA 194481 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || ||||| ||||||||||||| ||||| | |||||||||||||| ||||| || Sbjct 194482 TCTACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGCACGAGTCCGTTCGA 194537 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||||||||||||||| ||||||||| ||| || ||||| || ||||| || ||||| Sbjct 192313 GTAAATGTTGGATGTATACGGTTCGATGCTTTCGTTATTTCCTAGAATCTGTGCAGTCGA 192372 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTG 22596 || || ||||| || || | ||| || || |||| || |||||| Sbjct 192373 TGCAGTAGGCATAGGAGCTAGCAGGAGAGAATTTCGCACGCCGTG 192417 >seq520 Length=99801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 59572 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTC 59631 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | || ||||||||| || | || |||||||| Sbjct 59632 CGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 59691 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||| | || || ||||| || || | |||| Sbjct 59692 GCAGAGACTTATCTTCGCCGGTAAGAATTTGG 59723 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 59874 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTC 59933 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | || ||||||||| || | || |||||||| Sbjct 59934 CGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 59993 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||| | || || ||||| || || | |||| Sbjct 59994 GCAGAGACTTATCTTCGCCGGTAAGAATTTGG 60025 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 60176 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTC 60235 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| ||||| | || ||||||||| || | || |||||||| Sbjct 60236 CGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 60295 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||| | || || ||||| || || | |||| Sbjct 60296 GCAGAGACTTATCTTCGCCGGTAAGAATTTGG 60327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741815983040