Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq60 93.3 5e-14 >seq60 Length=331869 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| | |||||| | || || || || || || || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 |||||||||||||| || || | || | || |||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || || ||||| | |||||||||||||| ||||| | || | |||||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62942 TGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 63001 ||||| ||| || ||||| |||||||| || |||| ||| | ||||| | ||||| Sbjct 157794 TGCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGATGAATATTCAACGATCTC 157853 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 |||||| | ||| ||| ||||| ||||| | ||| |||||||||||||| ||||| Sbjct 157854 AGTGCACAAATTGGAACATTTGATCGTTCCCAGATTCTGTTGATTACTCTTCGAATTACA 157913 Query 63062 CGCATCCT 63069 ||||||| Sbjct 157914 TGCATCCT 157921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64087 |||||||||||| || ||||| ||||| || || |||||||||||||| ||||| | || Sbjct 159232 CTTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGT 159291 Query 64088 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 ||| ||||| |||| ||||||||| |||||||||| Sbjct 159292 AGTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63213 TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 || |||| |||||||| | ||||||||||| | ||| || ||| || |||| | Sbjct 158178 TCTAATCCGGGACATTCCTTGGGACACATCAAAGTCCAATCAGAATCAGTCTCAACTCTT 158237 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTC 63331 ||||| || |||||||||||||| || || ||| |||||||| | | ||| | |||||| Sbjct 158238 TTCATGAATAGATCAGGAATCCAGAGGGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTC 158296 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| |||||| || ||| | |||||| Sbjct 158297 TCCTCCAGTATTCATTCGAAGTTGGAGGAA 158326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629782865559360