Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq60 93.3 6e-14 >seq60 Length=331869 Score = 93.3 bits (102), Expect = 6e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | |||||| | || || || || || || || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||||||||| || || |||| | || |||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || || || ||||| | |||||||||||||| ||||| | || | || ||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 65735 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 65794 ||||| ||| || ||||| || ||||| || |||| ||| | ||||| | ||||| Sbjct 157794 TGCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGATGAATATTCAACGATCTC 157853 Query 65795 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 |||||| | ||| ||| ||||| ||||| | ||| |||||||||||||| ||||| Sbjct 157854 AGTGCACAAATTGGAACATTTGATCGTTCCCAGATTCTGTTGATTACTCTTCGAATTACA 157913 Query 65855 CGCATCCT 65862 ||||||| Sbjct 157914 TGCATCCT 157921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 66006 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 66065 || ||||| |||||||| | ||||||||||| | ||| || ||| || |||| | Sbjct 158178 TCTAATCCGGGACATTCCTTGGGACACATCAAAGTCCAATCAGAATCAGTCTCAACTCTT 158237 Query 66066 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 ||||| || |||||||||||||| || || ||| |||| ||| | | ||| | |||||| Sbjct 158238 TTCATGAATAGATCAGGAATCCAGAGGGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTC 158296 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 ||| |||||| || ||| | |||||| Sbjct 158297 TCCTCCAGTATTCATTCGAAGTTGGAGGAA 158326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 66822 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTA 66881 ||||||||||| || | ||| |||||||| || | |||||||||||| ||||| | ||| Sbjct 159233 TTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGTA 159292 Query 66882 GTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 || ||||| |||| ||||||||| |||||||||| Sbjct 159293 GTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658136501770080