Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq60 107 3e-18 >seq60 Length=331869 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | |||||| | || || || || || || || || | ||| || | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || ||||| || |||| |||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || ||||||||||| || || |||| || || |||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || || || ||||| | |||||||||||||| ||||| | || | |||||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 100 bits (110), Expect = 4e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 ||||||| || || | ||||| || || |||||||| |||||||| || ||||| Sbjct 158144 ATATAATTCCTCAAATTTTTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACA 158203 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 |||||| | ||| || |||| | |||| |||||| || |||||||||||||| || Sbjct 158204 CATCAAAGTCCAATCAGAATCAGTCTCAACTCTTTTCATGAATAGATCAGGAATCCAGAG 158263 Query 72054 AGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 || ||| |||||||| | | ||| | ||||| ||| |||||| || ||| | || Sbjct 158264 GGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGA 158322 Query 72113 GGAA 72116 |||| Sbjct 158323 GGAA 158326 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 72783 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGT 72842 |||||||||||| || | ||| ||||| || || |||||||||||||| ||||| | || Sbjct 159232 CTTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGT 159291 Query 72843 AGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 ||| ||||| |||||||||||||| |||||||||| Sbjct 159292 AGTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671102186673120