Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq138 111 2e-19 seq306 98.7 1e-15 >seq138 Length=243692 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||||| |||| | ||||| || | ||| || | || | || |||||| ||| ||| Sbjct 113776 TGGATCGCTGACAAGAAGTCGTCCTTCGCGGAGCGTCTCATCGCCTTCGCCTGCGTCGAG 113835 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| ||||| || ||||||||||| ||||| |||||| | ||||||||| Sbjct 113836 GGCATCTTCTTCTCGGGCTCGTTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATG 113895 Query 125511 CCCGGACTGACGCA 125524 |||||||| || || Sbjct 113896 CCCGGACTCACTCA 113909 >seq306 Length=152290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||||| || | ||| || ||| || | |||||||| ||| ||||| |||||||| ||| Sbjct 92839 AAGTCATCATTCGCTGAGAGATTGATTGCATTCGCGTGCGTTGAGGGAATCTTCTTCTCG 92780 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || |||||| ||||| || ||||| ||||| | ||||||||||||||||| || || Sbjct 92779 GGATCTTTTGCCGCCATTTTCTGGCTGAAGAAAAGAGGACTCATGCCCGGACTCACTCA 92721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741018330585120