Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq520 91.5 1e-13 seq115 91.5 1e-13 seq824 89.7 5e-13 seq534 86.0 6e-12 seq311 84.2 2e-11 >seq520 Length=99801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||| || ||||| || || || ||||| | || || Sbjct 59715 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59656 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | | ||||| |||| |||||||| || ||||| Sbjct 59655 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59596 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 59595 AGGGTCTTGACGAAGATCTGCATGC 59571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||| || ||||| || || || ||||| | || || Sbjct 60017 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59958 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | | ||||| |||| |||||||| || ||||| Sbjct 59957 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59898 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 59897 AGGGTCTTGACGAAGATCTGCATGC 59873 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||| || ||||| || || || ||||| | || || Sbjct 60319 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 60260 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | | ||||| |||| |||||||| || ||||| Sbjct 60259 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 60200 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 60199 AGGGTCTTGACGAAGATCTGCATGC 60175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||| || ||||| || || || ||||| | || || Sbjct 59412 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59353 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| || || | | ||||| |||| |||||||| || ||||| Sbjct 59352 GCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59293 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 59292 AGGGTCTTGACGAAGATCTGCATGC 59268 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| | ||| |||||||| ||||| || || || ||||| | || || ||| Sbjct 59007 CCGGCGAAGATAAGTCTCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 58948 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| ||| ||||| | ||||| || | |||||||||||||| || || Sbjct 58947 TTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATGGTTTTTCCGGTGAGC 58888 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| || || || ||||| Sbjct 58887 GTTTTGACGAAAATTTGCAT 58868 >seq115 Length=268835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| |||||||| || ||||| || || ||||| | || || Sbjct 194808 TTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTTG 194867 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| ||| ||||| | | ||||| || | |||||||| || ||||| Sbjct 194868 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 194927 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 194928 AGGGTCTTGACGAAGATCTGCATGC 194952 >seq824 Length=61743 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCT-GCCGA 115667 |||||||| | ||||||||||||| | |||| |||||||||||||||||||||| || | Sbjct 49732 TTGCTCCATGGGAGGATCGAACTCCCGACCTCGGCATTATAAGTACCACGCGCTAACCAA 49673 Query 115668 TTGCGCTACTGGAGCTTACCG 115688 ||||| | |||||| ||||| Sbjct 49672 CTGCGCCAATGGAGCATACCG 49652 >seq534 Length=97391 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| ||||| ||||| || || || || || || ||||| | || || ||| Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| ||| ||||| | | ||||| || | |||||||| || ||||| ||| Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| Sbjct 37493 GTCTTGACGAAGATCTGCAT 37474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| ||| | ||||| ||||| ||||| || || || || || || || || | || Sbjct 39067 TGTTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGGATC 39008 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||||||| ||| ||||| | | ||||| || | |||||||| || ||| Sbjct 39007 TTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCA 38948 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| Sbjct 38947 GTGAGGGTCTTGACGAAGATCTGCAT 38922 >seq311 Length=150853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 115610 TGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCT-GCCGAT 115668 ||||||| | ||||||||||||| | |||| |||||||||||||||||||||| || | Sbjct 28613 TGCTCCATGGGAGGATCGAACTCCCGACCTCGGCATTATAAGTACCACGCGCTAACCAAC 28554 Query 115669 TGCGCTACTGGAGCTTAC 115686 ||||| | ||||||| || Sbjct 28553 TGCGCCAATGGAGCTGAC 28536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448266476740320