Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq242 185 1e-42 seq152 179 6e-41 seq621 158 2e-34 seq203 149 1e-31 seq1983 120 5e-23 seq176 109 9e-20 seq653 80.6 4e-11 >seq242 Length=178806 Score = 185 bits (204), Expect = 1e-42 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 96282 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 96341 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 96342 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 96401 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 96402 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 96461 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || | || || || ||| Sbjct 96462 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 96521 Query 16673 CG 16674 || Sbjct 96522 CG 96523 >seq152 Length=233279 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 226307 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 226366 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 226367 CGCCGTCTAGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 226426 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 226427 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 226486 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 226487 CACGCCAAGAGAAAGACAGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGC 226546 Query 16673 CG 16674 || Sbjct 226547 CG 226548 >seq621 Length=81976 Score = 158 bits (174), Expect = 2e-34 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 25893 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 25952 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || ||| || ||||||||||| |||||||| | ||||||| |||| Sbjct 25953 CGCCGTCTCGCCCGCCGTTGTTGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 26012 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 26013 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 26072 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| || |||| ||||||| || || || | || ||| Sbjct 26073 CATGCCAAGAGAAAGACCGTCACCGCCTTGGACGTCGTCTACGCTTTCAAGCCCCAGGGC 26132 Query 16673 CG 16674 || Sbjct 26133 CG 26134 >seq203 Length=201139 Score = 149 bits (164), Expect = 1e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 199216 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 199275 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || |||||||||||||||||| |||||||| | ||||||| |||| Sbjct 199276 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACC 199335 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 199336 CGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 199395 Query 16613 CACGCTAAACGTAAGAC 16629 ||||| || | ||||| Sbjct 199396 CACGCCAAGAGAAAGAC 199412 >seq1983 Length=11919 Score = 120 bits (132), Expect = 5e-23 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || || || |||||||||||||||||| |||||||| | ||||||| |||| |||| | Sbjct 5769 CTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACCCGTGGT 5828 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||||||| Sbjct 5829 GTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAGCACGCC 5888 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | ||||| |||||| ||||||| ||||||| || | || || || ||||| Sbjct 5889 AAGAGAAAGACGGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 5944 >seq176 Length=214660 Score = 109 bits (120), Expect = 9e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 61928 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACAAAGCCCGCTATT 61987 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||||| || || |||||||||||||||||| ||||||| | | |||||||||| Sbjct 61988 CGCCGTCTCGCCCGCCGTGGTGGAGTCAAGCGTATCTCTGGGCTCATATATGAAGAGA 62045 >seq653 Length=78593 Score = 80.6 bits (88), Expect = 4e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 78510 GCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATT 78569 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| || || ||||||||| Sbjct 78570 CGCCGTCTCGCCCGCCGTGGTGGA 78593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071166077516