Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq60 93.3 5e-14 >seq60 Length=331869 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63162 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63221 || ||||| |||||||| | ||||||||||| | ||| || ||| || |||| | Sbjct 158178 TCTAATCCGGGACATTCCTTGGGACACATCAAAGTCCAATCAGAATCAGTCTCAACTCTT 158237 Query 63222 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 63280 ||||| || |||||||||||||| || || ||| |||||||| | | ||| | |||||| Sbjct 158238 TTCATGAATAGATCAGGAATCCAGAGGGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTC 158296 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||| |||||| || ||| | |||||| Sbjct 158297 TCCTCCAGTATTCATTCGAAGTTGGAGGAA 158326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | |||||| | || || || || || || || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||||||||| || || |||| | || |||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || || || ||||| | |||||||||||||| ||||| | || | || ||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||| || ||||| || ||||| || |||| ||| | ||||| | |||||| Sbjct 157795 GCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGATGAATATTCAACGATCTCA 157854 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | ||| ||| ||||| ||||| | ||| |||||||||||||| ||||| Sbjct 157855 GTGCACAAATTGGAACATTTGATCGTTCCCAGATTCTGTTGATTACTCTTCGAATTACAT 157914 Query 63012 GCATCCT 63018 ||||||| Sbjct 157915 GCATCCT 157921 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64036 |||||||||||| || | ||| ||||| || || |||||||||||||| ||||| | || Sbjct 159232 CTTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGT 159291 Query 64037 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078 ||| ||||| |||| ||||||||| |||||||||| Sbjct 159292 AGTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622912844461920