Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq520 86.0 6e-12 >seq520 Length=99801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| | | |||||| || ||||||||||| || ||||| ||| || | Sbjct 59007 CCGGCGAAGATAAGTCTCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 58948 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| | ||| | || |||| | ||||| |||| ||| | |||||| ||||| || Sbjct 58947 TTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATGGTTTTTCCGGTGAGC 58888 Query 131215 GTTTTTACGAAAATCTGCAT 131234 ||||| |||||||| ||||| Sbjct 58887 GTTTTGACGAAAATTTGCAT 58868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || ||| |||| | | ||||||||| ||||||||||| || ||||| ||| || Sbjct 59413 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59354 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 ||||| | || | ||||||| || ||||| || | ||| | ||| || || || Sbjct 59353 GGCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59294 Query 131211 TAGAGTTTTTACGAAAATCTGCATGACT 131238 || || || ||||| ||||||||| || Sbjct 59293 CAGGGTCTTGACGAAGATCTGCATGCCT 59266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471986768494080