Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2709 114 9e-21 seq811 109 4e-19 seq2815 104 2e-17 seq2618 102 5e-17 seq131 95.1 8e-15 >seq2709 Length=5116 Score = 114 bits (126), Expect = 9e-21 Identities = 75/83 (90%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 16 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 75 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| ||||||||||||| || Sbjct 76 TAATCCATTCATGCGCGTCATTA 98 >seq811 Length=62883 Score = 109 bits (120), Expect = 4e-19 Identities = 72/80 (90%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 25914 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGAGAATCTCGT 25855 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 25854 TAATCCATTCATGCGCGTCA 25835 >seq2815 Length=4299 Score = 104 bits (114), Expect = 2e-17 Identities = 68/75 (91%), Gaps = 5/75 (7%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 4299 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 4240 Query 25963 TTTCATGCGCGTCAC 25977 |||||||||||||| Sbjct 4239 ATTCATGCGCGTCAC 4225 >seq2618 Length=5766 Score = 102 bits (112), Expect = 5e-17 Identities = 67/74 (91%), Gaps = 5/74 (7%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 5766 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 5707 Query 25963 TTTCATGCGCGTCA 25976 ||||||||||||| Sbjct 5706 ATTCATGCGCGTCA 5693 >seq131 Length=252658 Score = 95.1 bits (104), Expect = 8e-15 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 6199 CGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||||| |||||||| ||||| || ||||||||||||||| ||||| ||||| | Sbjct 225005 CGTTCTATCGCTACAAGATGCCCAAGATTCTCGCCAAGGTCGAGGGCAAGGGCAACGGCA 225064 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCA-CC 6317 | || || ||||| | ||||||| | || | || ||||| |||| ||||| |||| || Sbjct 225065 TCAAGACAGTCATCGCCAACATGTCGGACATAGCGAAGGCACTCGAGCGCCC-GCCATCC 225123 Query 6318 TACCCGACGAA 6328 ||||| || || Sbjct 225124 TACCCCACCAA 225134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334929189470372