Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 1e-15 >seq60 Length=331869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | |||||| | || || || || ||||| || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||||||||| || || |||| | || |||| || || ||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || || ||||| | |||||||||||||| ||||| | || | || ||||| Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62746 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62805 ||||| ||| || ||||| || ||||| || |||| ||| | ||||| | ||||| Sbjct 157794 TGCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGATGAATATTCAACGATCTC 157853 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 |||||| | ||| ||| ||||| ||||| | ||| |||||||||||||| ||||| Sbjct 157854 AGTGCACAAATTGGAACATTTGATCGTTCCCAGATTCTGTTGATTACTCTTCGAATTACA 157913 Query 62866 CGCATCCT 62873 ||||||| Sbjct 157914 TGCATCCT 157921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081 ||| |||||||| | ||||||||||| | ||| || ||| || |||| |||||| Sbjct 158183 TCCGGGACATTCCTTGGGACACATCAAAGTCCAATCAGAATCAGTCTCAACTCTTTTCAT 158242 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 || |||||||||||||| || || ||| |||||||| | | ||| | |||||| || Sbjct 158243 GAATAGATCAGGAATCCAGAGGGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTCTCCTC 158301 Query 63141 CTGTATTCTTTTTAAGATCGAGGAA 63165 | |||||| || ||| | |||||| Sbjct 158302 CAGTATTCATTCGAAGTTGGAGGAA 158326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 63833 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 63892 ||||||||||| || | ||| |||||||| || |||||||||||||| ||||| | ||| Sbjct 159233 TTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGTA 159292 Query 63893 GTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 || ||||| |||| ||||||||| |||||||||| Sbjct 159293 GTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTC 159333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633597055195200