Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq138 100 5e-16 >seq138 Length=243692 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| ||| | || | ||||| || ||||||||||||||||||||||||| | ||| Sbjct 113800 TTCGCGGAGCGTCTCATCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC 113859 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || ||||||||||||| ||| ||| ||| || |||||||||||||| ||||| || Sbjct 113860 GCGGCCATCTTCTGGCTGAAGAAGAGAGGACTC-ATGCCCGGACTCACTCATTCGAATGA 113918 Query 42812 ACTCATC 42818 |||||| Sbjct 113919 GCTCATC 113925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944287119693120