Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq534 104 6e-17 seq115 96.9 8e-15 seq520 91.5 3e-13 >seq534 Length=97391 Score = 104 bits (114), Expect = 6e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 |||||||| || |||||||||| | ||| || | |||||||| || ||||||||| Sbjct 39070 AATTGTTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGG 39011 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || ||||| || || | ||| | || || ||||| ||||| ||||| Sbjct 39010 ATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTG 38951 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||||||||| ||||||||| Sbjct 38950 CCAGTGAGGGTCTTGACGAAGATCTGCATT 38921 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | ||| || | |||||||| || || |||||||| || || Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | || || ||||| ||||| ||||| || || ||| Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||||||| Sbjct 37493 GTCTTGACGAAGATCTGCATT 37473 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || || ||||| | ||| ||| || ||||| || ||||| | Sbjct 38921 TCCTCCTCTGAGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 38862 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | || ||||| |||||||||| | ||| || | || Sbjct 38861 AAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGGG 38802 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || ||||||||||| || || || ||||| || || | ||| | || || Sbjct 38801 GATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGAC 38742 Query 288426 TTCGAGCGTGATCGTCTTCCC 288446 ||||| ||||| ||||| || Sbjct 38741 CTCGAGGGTGATGGTCTTGCC 38721 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | ||| || | |||||||| || || |||||||| || || Sbjct 37273 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37214 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | || || ||||| ||||| ||||| ||||| || Sbjct 37213 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 37154 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 37153 GTCTTGACGAAGATTTGCAT 37134 >seq115 Length=268835 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| ||| | || ||||| || || |||||||| || Sbjct 194808 TTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTTG 194867 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| | || || ||||| ||||| ||||| || ||| Sbjct 194868 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 194927 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 194928 AGGGTCTTGACGAAGATCTGCAT 194950 >seq520 Length=99801 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || |||||||| || || |||||||| || Sbjct 59412 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59353 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | |||| | || || || || ||||| ||||| || ||| Sbjct 59352 GCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59293 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 59292 AGGGTCTTGACGAAGATCTGCAT 59270 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || |||||||| || || |||||||| || Sbjct 59715 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59656 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| | || || || || ||||| ||||| || ||| Sbjct 59655 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59596 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 59595 AGGGTCTTGACGAAGATCTGCAT 59573 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || |||||||| || || |||||||| || Sbjct 60017 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59958 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| | || || || || ||||| ||||| || ||| Sbjct 59957 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59898 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 59897 AGGGTCTTGACGAAGATCTGCAT 59875 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || |||||||| || || |||||||| || Sbjct 60319 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 60260 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| | || || || || ||||| ||||| || ||| Sbjct 60259 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 60200 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 60199 AGGGTCTTGACGAAGATCTGCAT 60177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179587715611336