Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq138 107 2e-18 seq306 102 1e-16 >seq138 Length=243692 Score = 107 bits (118), Expect = 2e-18 Identities = 114/150 (76%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 126074 CGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAG 126133 || |||||||| |||||||| ||||| |||||||| || | |||||||| |||| Sbjct 113930 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAG 113871 Query 126134 AAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGA 126193 || || || || || |||||||||||||| ||||| || || ||||| || | |||| Sbjct 113870 AAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGATGAGA 113811 Query 126194 CGCTCAGCAAAGGAGCGCGACTTTGTGTCA 126223 ||||| || ||||| |||||| ||||| Sbjct 113810 CGCTCCGCGAAGGA---CGACTTCTTGTCA 113784 >seq306 Length=152290 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126074 CGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAG 126133 || |||||||| |||||||| ||||| |||||||| || | ||||||| |||| Sbjct 92700 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTTTTCTTCAGCCAG 92759 Query 126134 AAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGA 126193 ||||| || ||| || |||||||||||||||||||| || |||||||| |||| | Sbjct 92760 AAAATGGCGGCAAAAGATCCCGAGAAGAAGATTCCCTCAACGCACGCGAATGCAATCAAT 92819 Query 126194 CGCTCAGCAAAGGA 126207 | |||||| || || Sbjct 92820 CTCTCAGCGAATGA 92833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597320655948960