Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq520 104 2e-17 seq115 95.1 1e-14 seq534 91.5 1e-13 >seq520 Length=99801 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||| | || ||||||||||||||| || |||||||||||| ||| || | Sbjct 59007 CCGGCGAAGATAAGTCTCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 58948 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| |||||| | | |||||| |||| ||| | ||||| ||||| || Sbjct 58947 TTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATGGTTTTTCCGGTGAGC 58888 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| ||||| Sbjct 58887 GTTTTGACGAAAATTTGCAT 58868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | || |||||| |||||||| || |||||||||||| ||| || Sbjct 59715 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59656 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| |||||| | |||||| || | ||| | || ||||| ||| Sbjct 59655 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59596 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || ||||||||| || Sbjct 59595 AGGGTCTTGACGAAGATCTGCATGCCT 59569 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | || |||||| |||||||| || |||||||||||| ||| || Sbjct 60017 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59958 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| |||||| | |||||| || | ||| | || ||||| ||| Sbjct 59957 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59898 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || ||||||||| || Sbjct 59897 AGGGTCTTGACGAAGATCTGCATGCCT 59871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | || |||||| |||||||| || |||||||||||| ||| || Sbjct 60319 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 60260 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| |||||| | |||||| || | ||| | || ||||| ||| Sbjct 60259 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 60200 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || ||||||||| || Sbjct 60199 AGGGTCTTGACGAAGATCTGCATGCCT 60173 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | || |||||| |||||||| || |||||||||||| ||| || Sbjct 59412 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59353 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| ||| || | |||||| || | ||| | || ||||| ||| Sbjct 59352 GCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59293 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || ||||||||| || Sbjct 59292 AGGGTCTTGACGAAGATCTGCATGCCT 59266 >seq115 Length=268835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | || ||||||||| || || || |||||||||||| ||| || Sbjct 194808 TTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTTG 194867 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| |||||| | |||||| |||| ||| | || ||||| ||| Sbjct 194868 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 194927 Query 127091 AGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || || || ||||||||| || Sbjct 194928 AGGGTCTTGACGAAGATCTGCATGCCT 194954 >seq534 Length=97391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||| |||||| || || || || |||||||||||| ||| || | Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| |||||| | |||||| |||| ||| | || ||||| || ||| Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 37493 GTCTTGACGAAGATCTGCAT 37474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||| |||||| || || || || |||||||||||| ||| || | Sbjct 37273 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37214 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| |||||| | |||||| |||| ||| | || || ||||| || Sbjct 37213 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 37154 Query 127094 GTTTTTACAAAAATCTGCATGG 127115 || || || || || ||||||| Sbjct 37153 GTCTTGACGAAGATTTGCATGG 37132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475474576130880