Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq138 93.3 5e-14 seq306 86.0 8e-12 >seq138 Length=243692 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 127547 CGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAG 127606 || |||||||| |||||||| || || |||||||| || | |||||||| |||| Sbjct 113930 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAG 113871 Query 127607 AAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGA 127666 || || || || ||||| ||||||||||| ||||| || || ||||| || | ||| Sbjct 113870 AAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGATGAGA 113811 Query 127667 CGCTCGGCAAAGGA 127680 ||||| || ||||| Sbjct 113810 CGCTCCGCGAAGGA 113797 >seq306 Length=152290 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 127547 CGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAG 127606 || |||||||| |||||||| || || |||||||| || | ||||||| |||| Sbjct 92700 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTTTTCTTCAGCCAG 92759 Query 127607 AAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAA 127661 ||||| || ||| || || ||||||||||| ||||| || |||||||| |||| Sbjct 92760 AAAATGGCGGCAAAAGATCCCGAGAAGAAGATTCCCTCAACGCACGCGAATGCAA 92814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613473365077920