Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq534 100 7e-16 >seq534 Length=97391 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || || ||||| |||| ||||||||||| | ||| | ||||| Sbjct 38905 AGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 38846 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||| | | ||||||||| || ||||| || ||| Sbjct 38845 TCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCC 38786 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 38785 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 38726 Query 199598 TTACC 199602 || || Sbjct 38725 TTGCC 38721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178854957035604