Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq520 87.8 2e-12 seq115 82.4 9e-11 >seq520 Length=99801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||||||||| | || |||||| ||||| |||||||||| Sbjct 59573 TGCCTCCTCTGAGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 59514 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | ||||| || |||| |||||||||||||| Sbjct 59513 AGAGAGTACGACCGTCCTCGAGCTGCTTGCC 59483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||||||||| | || |||||| ||||| |||||||||| Sbjct 59875 TGCCTCCTCTGAGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 59816 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | ||||| || |||| |||||||||||||| Sbjct 59815 AGAGAGTACGACCGTCCTCGAGCTGCTTGCC 59785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||||||||| | || |||||| ||||| |||||||||| Sbjct 60177 TGCCTCCTCTGAGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 60118 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | ||||| || |||| |||||||||||||| Sbjct 60117 AGAGAGTACGACCGTCCTCGAGCTGCTTGCC 60087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || |||||||| | ||| | ||||||||| | || |||||| ||||| ||||| Sbjct 60485 TTAGTTTCCTCCTCTGAGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTA 60426 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 |||||| ||||| || |||| |||||||||||||| Sbjct 60425 GTCGGAGAGAGTACGACCGTCCTCGAGCTGCTTGCC 60390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||||||||| | || |||||| ||||| |||||||||| Sbjct 59270 TGCCTCCTCTGAGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 59211 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 | ||||| || |||| ||||||||||| || Sbjct 59210 AGAGAGTACGACCGTCCTCGAGCTGCTTTCC 59180 >seq115 Length=268835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| ||||||||||| | ||| | ||||||||| | || |||||| ||||| |||| Sbjct 194638 ATTAGTTGCCTCCTCTGAGACGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGT 194697 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGC 46458 | ||||| || ||||| | || || ||||||||||| || Sbjct 194698 AATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCTGC 194737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565207227102240