Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq534 122 9e-23 seq115 100 3e-16 seq520 98.7 1e-15 >seq534 Length=97391 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAA 38329 ||||| ||||||||| |||| ||||||||| |||||| | | | |||| | || | || Sbjct 38721 GGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGACACCATCGAGAACG-TCAAGGCTAA 38779 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| || || |||||||| ||| | ||||| ||| | | || | ||| || || || Sbjct 38780 GATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAGAGATTGATCTTCGCTGGAAAGCA 38839 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 ||| || || | ||||| || |||||||||||||| |||||| | || || ||| | Sbjct 38840 GCTTGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCT 38899 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||| | ||||| || Sbjct 38900 GGTGCTCCGTCTCAGAGGAGG 38920 >seq115 Length=268835 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| ||||||||| || Sbjct 194950 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 194891 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| ||||| |||||||||||| | || || Sbjct 194890 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCA 194832 Query 38363 ACAGCGGCTCATTTACGCGGGCAA 38386 ||| | ||||| | ||| || || Sbjct 194831 GCAGAGACTCATCTTCGCCGGTAA 194808 >seq520 Length=99801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||||||||| || |||||||||||| |||| |||||||| || Sbjct 58868 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTCGAGGTCGAGGCTTCC 58927 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || |||| || Sbjct 58928 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCA 58986 Query 38363 ACAGCGGCTCATTTACGCGGG 38383 ||| | || || | ||| || Sbjct 58987 GCAGAGACTTATCTTCGCCGG 59007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145215470080