Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq888 156 2e-32 seq1973 145 3e-29 seq1854 96.9 1e-14 seq908 96.9 1e-14 seq812 87.8 7e-12 seq285 87.8 7e-12 >seq888 Length=55613 Score = 156 bits (172), Expect = 2e-32 Identities = 390/578 (67%), Gaps = 26/578 (4%) Strand=Plus/Plus Query 451910 GTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATA-----TGTTGTCTTCTTATTTTG 451964 || ||||| ||||| |||||||| | | || || | || || |||||| | Sbjct 5678 GTTGGAGGATCTACTCGAATTCCACGAGTACA-GAAACTTCTTGCTGACTTCTTC----G 5732 Query 451965 GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAG 452024 ||||||| |||| |||| | | ||||| |||||||| ||||| ||||| ||||||| Sbjct 5733 GAGGAAAGGAACTCTGTACTGGAATCAATCCCGATGAAGCCGTTGCCTATGGAGCTGCAG 5792 Query 452025 TTCAAGCAGCTATTCTAACAGG--TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGT 452082 | ||||| ||||||||| |||| |||| | | || | | | | ||| |||| | || Sbjct 5793 TACAAGCTGCTATTCTATCAGGAGTTCA-AGACTCAACAGTCAAG-GATGTTCTACTCGT 5850 Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC-TAATTTAA 452141 ||||| | || || || | ||| | || || ||||| ||| | ||||| | | || Sbjct 5851 TGATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTG- 5909 Query 452142 TTAAACGAGGAA--CTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGA 452199 || | ||||| || ||||||| | | | | ||||| || ||| Sbjct 5910 -TAGAT-AGGAATACTCGTATTCCTACTCGAGCTATGAAGACATTCTCCACTTATGCTGA 5967 Query 452200 TAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAA 452259 ||| |||||||| ||| | |||||||| || ||||||||||| ||| | || ||||| Sbjct 5968 TAATCAACCAGGAGTATCCATTCAAGTATTCGAAGGAGAACGAGCACTTACCAAGGATAA 6027 Query 452260 TAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319 | || |||| ||| | || || || ||||||||| ||||| ||| |||||| Sbjct 6028 TCATCAACTTGGAAACTTCGAACTATCTGGAATTCCTCCTGCACCAAGAGGAGTTCCTCA 6087 Query 452320 AATTGAAATTACCTAT--GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 |||||| | | ||| || ||||||||||||| ||||| ||||| ||| || Sbjct 6088 GATTGAAGT--CGTATTCGAGATTGATGCAAATGGAATTCTGGCTGTGACTGCTACGGAT 6145 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 || ||| |||| ||| |||| ||| || || | ||||| || || || ||| Sbjct 6146 AAGTCAACTGG-AAAGAAGAATGCAATCACTATCAAGAATGAGAAGGGACGATTGAGTAA 6204 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 ||||| ||||| || ||||| | || |||| |||| Sbjct 6205 GGAAGAAATTGAGAAGATGGTTCAAGATGCAGCCAAAT 6242 Score = 102 bits (112), Expect = 3e-16 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || ||||| || || || || ||||| || | ||||| |||||||| || ||| Sbjct 5087 GAAGCCGTGATTACCGTACCAGCGTACTTCAACGACTCTCAACGACAAGCAACGAAGGAT 5146 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| | || ||||| | || |||||| || ||||||||||| ||||| ||||| Sbjct 5147 GCAGCAACCATCTCTGGTCTCAAGTGTCTTCGTATCATTAATGAACCGACAGCTGCTGCA 5206 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | ||||||||| | ||| || || | | | ||| | |||| | || | |||||| Sbjct 5207 TTGGCATATGGA-TTGGACAA--GAATCCATCTGGAGAGAGAAATGTGTTGATCTTTGAT 5263 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT---TGAAGATGGGGTATTTGAA 451555 | || |||||||| ||| || | || |||| ||||| |||| ||| Sbjct 5264 CTCGGAGGAGGAACATTCGATGTATCGATTCTAACAATCTCTGAAGGATCTCTATTCGAA 5323 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||| | || || ||||||||| ||||||| |||||| | ||| Sbjct 5324 GTACGATCTACAGCAGGAGATACTCATTTAGGAGGAGAAGATTTCGAT 5371 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||||| ||||| ||||| ||||| || | ||||||||| || || |||||||||||| Sbjct 4238 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAAAATGGACG 4297 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCAT 451019 || ||||| || || || || |||||| ||| |||||||||| Sbjct 4298 AGTTGAAATCATCGCGAAAGATCAAGGAAACAAAACCACTCCTTCAT 4344 Score = 84.2 bits (92), Expect = 9e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||||| ||||| ||||| ||||| || | ||||||||| || || |||||||||||| Sbjct 2021 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAAAATGGACG 2080 Query 450973 TGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCAT 451019 || ||||| || || || || ||||| | || | || |||||||||| Sbjct 2081 AGTTGAAATCATCGCGAACGATCAAGGAAACAAG-ACCACTCCTTCAT 2127 >seq1973 Length=12115 Score = 145 bits (160), Expect = 3e-29 Identities = 389/580 (67%), Gaps = 30/580 (5%) Strand=Plus/Minus Query 451910 GTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATA-----TGTTGTCTTCTTATTTTG 451964 || ||||| ||||| |||||||| | | || || | || || |||||| | Sbjct 1445 GTTGGAGGATCTACTCGAATTCCACGAGTACA-GAAACTTCTTGCTGACTTCTTC----G 1391 Query 451965 GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAG 452024 ||||||| |||| |||| | | ||||| ||||| |||||||| ||||| ||||||| Sbjct 1390 GAGGAAAGGAACTCTGTACTGGAATCAATCCCGATGATGCTGTTGCCTATGGAGCTGCAG 1331 Query 452025 TTCAAGCAGCTATTCTAACAGG--TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGT 452082 ||||||| ||||||||| |||| |||| | | || | | | | ||| |||| | || Sbjct 1330 TTCAAGCTGCTATTCTATCAGGAGTTCA-AGACTCAACAGTCAAG-GATGTTCTACTCGT 1273 Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC-TAATTTAA 452141 ||||| | || || || | ||| | || || ||||| ||| | ||||| | | || Sbjct 1272 TGATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGT 1213 Query 452142 TTAAACGAGGAACTTCTATTCCTTGTAAAAAGAG---TCAA-ACATTTAGTACAGCAAGT 452197 | | || ||| ||||| || ||| | || ||||| || | Sbjct 1212 CGATA-GAAATACTCGCATTCC----AACTCGAGCTATGAAGACATTCTCCACTTATGCT 1158 Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 ||||| |||||||| || | |||||||| || ||||||||||| || | || ||| Sbjct 1157 GATAATCAACCAGGAGTTTCCATTCAAGTATTCGAAGGAGAACGAGCTCTTACCAAGGAT 1098 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| || |||| ||| | || || || ||||||||| ||||| ||| |||| Sbjct 1097 AATCATTAACTTGGAAACTTCGAACTATCTGGAATTCCTCCTGCACCAAGAGGAGTTCCT 1038 Query 452318 CAAATTGAAATTACCTAT--GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTG 452375 || |||||| | | ||| || ||||||||||||| |||||| ||||| ||| | Sbjct 1037 CAGATTGAAGT--CTTATTCGAGATTGATGCAAATGGAATTCTTGCTGTGACTGCTACGG 980 Query 452376 AAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434 | || ||| |||| ||| |||| ||| || || | ||||| || || || | Sbjct 979 ATAAGTCAACTGG-AAAGAAGAATGCAATCACTATCAAGAATGAGAAGGGACGATTGAGT 921 Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 || ||||| ||||| || ||||| | || |||| |||| Sbjct 920 AAGGAAGAAATTGAGAAGATGGTTCAAGATGCAGCCAAAT 881 Score = 96.9 bits (106), Expect = 1e-14 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || ||||| || || || || ||||||||| | ||||| |||||||| || ||| Sbjct 2181 GAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGAT 2122 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| | || ||||| | || ||| || || || ||||||||||| || ||||| Sbjct 2121 GCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGCA 2062 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | ||||||||| | ||| || || | | | ||| | |||| | | | |||||| Sbjct 2061 TTGGCATATGGA-TTGGACAA--GAATCTATCTGGAGAGAGAAATGTGCTGATCTTTGAT 2005 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT---TGAAGATGGGGTATTTGAA 451555 | || |||||||| ||| || | || |||| |||| |||| ||| Sbjct 2004 CTCGGAGGAGGAACATTCGATGTATCGATTCTAACAATCTCGGAAGGATCTCTATTCGAA 1945 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||| |||| || ||||||||| ||||||| |||||| | ||| Sbjct 1944 GTACGATCAACAGCAGGAGATACTCATTTAGGAGGAGAAGATTTCGAT 1897 >seq1854 Length=14611 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || ||||| || || || || ||||||||| | ||||| |||||||| || ||| Sbjct 14419 GAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGAT 14478 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| | || ||||| | || ||| || || || ||||||||||| || ||||| Sbjct 14479 GCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGCA 14538 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | ||||||||| | ||| || || | | | ||| | |||| | || | |||||| Sbjct 14539 TTGGCATATGGA-TTGGACAA--GAATCTATCTGGAGAGAGAAATGTGTTGATCTTTGAT 14595 Query 451499 TTTGGTGGAGGAAC 451512 | || |||||||| Sbjct 14596 CTCGGAGGAGGAAC 14609 Score = 87.8 bits (96), Expect = 7e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||||| ||||| ||||| ||||| || | ||| ||||| || || ||||| |||||| Sbjct 13606 AGCAATCGGAATCGATCTGGGAACGACTTATTCGTGTGTTGGAGTCTACCAGAATGGACG 13665 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGA-ACTACTCCTTCATGGGTAAGTTTTA 451031 || ||||| || || ||||| |||||| || | || ||||||||||| || || | Sbjct 13666 AGTTGAAATCATCGCGAATGATCAAGGAA-ACAAGACCACTCCTTCATGCGTTGCATTCA 13724 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA 451070 | ||| ||| ||||| | || | ||||||| ||||| Sbjct 13725 CTGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAA 13765 >seq908 Length=54638 Score = 96.9 bits (106), Expect = 1e-14 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || ||||| || || || || ||||||||| | ||||| |||||||| || ||| Sbjct 37957 GAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGAT 38016 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| | || ||||| | || ||| || || || ||||||||||| || ||||| Sbjct 38017 GCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGCA 38076 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | ||||||||| | ||| || || | | | ||| | |||| | | | |||||| Sbjct 38077 TTGGCATATGGA-TTGGACAA--GAATCTATCTGGAGAGAGAAATGTGCTGATCTTTGAT 38133 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAAT---TGAAGATGGGGTATTTGAA 451555 | || |||||||| ||| || | || |||| |||| |||| ||| Sbjct 38134 CTCGGAGGAGGAACATTCGATGTATCGATTCTAACAATCTCGGAAGGATCTCTATTCGAA 38193 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||| |||| || ||||||||| ||||||| |||||| | ||| Sbjct 38194 GTACGATCAACAGCAGGAGATACTCATTTAGGAGGAGAAGATTTCGAT 38241 >seq812 Length=62635 Score = 87.8 bits (96), Expect = 7e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||||| ||||| ||||| ||||| || | ||| ||||| || || ||||| |||||| Sbjct 425 AGCAATCGGAATCGATCTGGGAACGACTTATTCGTGTGTTGGAGTCTACCAGAATGGACG 366 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGA-ACTACTCCTTCATGGGTAAGTTTTA 451031 || ||||| || || ||||| |||||| || | || ||||||||||| || || | Sbjct 365 AGTTGAAATCATCGCGAATGATCAAGGAA-ACAAGACCACTCCTTCATGCGTTGCATTCA 307 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA 451070 | ||| ||| ||||| | || | ||||||| ||||| Sbjct 306 CTGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAA 266 >seq285 Length=161344 Score = 87.8 bits (96), Expect = 7e-12 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||||| ||||| ||||| ||||| || | ||||||||| || || |||||||||||| Sbjct 86675 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAAAATGGACG 86734 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 || ||||| || || ||||| |||||| ||| |||||||| | || || || Sbjct 86735 AGTTGAAATCATCGCGAATGATCAAGGAAACAAAACCACTCCTTCCTACGTTGCATTCAC 86794 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA 451070 ||| ||| ||||| | || | ||||||| ||||| Sbjct 86795 TGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAA 86834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975606715108496