Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq138 102 1e-16 seq306 93.3 5e-14 >seq138 Length=243692 Score = 102 bits (112), Expect = 1e-16 Identities = 104/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 119522 CCGAGAGATGAGCTCATTACTGAAGCAA--AGTCCAGGCATGAGTCCTCTTTTCTTTAGC 119579 ||| |||||||||||||| ||| | ||||| |||||||||||||| ||||| ||| Sbjct 113931 CCGCGAGATGAGCTCATTC--GAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGC 113874 Query 119580 CAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAAT 119639 || |||||||| || || || |||||||||||||| || |||||||| |||| Sbjct 113873 CAGAAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGATG 113814 Query 119640 AGACGCTCAGCAAA 119653 |||||||| || || Sbjct 113813 AGACGCTCCGCGAA 113800 >seq306 Length=152290 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 119522 CCGAGAGATGAGCTCATTACTGAAGCAA--AGTCCAGGCATGAGTCCTCTTTTCTTTAGC 119579 ||| |||||||||||||| ||| | ||||| |||||||||||||||||||| ||| Sbjct 92699 CCGCGAGATGAGCTCATTC--GAATGAGTGAGTCCGGGCATGAGTCCTCTTTTCTTCAGC 92756 Query 119580 CAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAAT 119639 || || ||||| |||| ||| || |||||||| ||||| || || ||||| || | Sbjct 92757 CAGAAAATGGCGGCAAAAGATCCCGAGAAGAAGATTCCCTCAACGCACGCGAATGCAATC 92816 Query 119640 AGACGCTCAGCAAA 119653 | | |||||| || Sbjct 92817 AATCTCTCAGCGAA 92830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588943517973600