Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq534 104 5e-17 seq520 98.7 2e-15 >seq534 Length=97391 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || || || || ||||| || || || || ||||| || | |||||| Sbjct 38915 TCTGAGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGT 38856 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | || || ||||| || || || || Sbjct 38855 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCC 38796 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || || |||||||||||| |||||||| || || || || || Sbjct 38795 CTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAG 38736 Query 195099 GGTAACCGTCTTTCC 195113 ||| | ||||| || Sbjct 38735 GGTGATGGTCTTGCC 38721 >seq520 Length=99801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||||||||||| || || || ||||| || || || ||||| || || || Sbjct 59011 CTAACCGGCGAAGATAAGTCTCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 58952 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| |||||||| ||| || || || ||||| | || ||||| || Sbjct 58951 GGCCTTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATGGTTTTTCCGGT 58892 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 58891 GAGCGTTTTGACGAAAATTTGCAT 58868 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 59716 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59657 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || |||||||| | ||||| || || Sbjct 59656 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59597 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 59596 CAGGGTCTTGACGAAGATCTGCAT 59573 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 60018 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59959 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || |||||||| | ||||| || || Sbjct 59958 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59899 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 59898 CAGGGTCTTGACGAAGATCTGCAT 59875 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 60320 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 60261 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || |||||||| | ||||| || || Sbjct 60260 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 60201 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 60200 CAGGGTCTTGACGAAGATCTGCAT 60177 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||||| || ||||| ||||| || || || ||||| || || || Sbjct 59413 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59354 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| || || || || |||||||| | ||||| || || Sbjct 59353 GGCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59294 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 59293 CAGGGTCTTGACGAAGATCTGCAT 59270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109418882392004