Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq60 109 6e-19 >seq60 Length=331869 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 ||| ||||| |||||||||||||| | ||| ||||| | | | || |||| ||||| || Sbjct 158383 CATGATATCTGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCAGGTCTCTTATTTCC 158442 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 ||||||||| | |||| ||||||||||||| | |||| | ||| || |||| ||||| Sbjct 158443 TCCTTGATCCACATATTTGGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGTCCATT 158502 Query 48422 TGATATACCATTGGT 48436 || ||||||| || Sbjct 158503 CGAAGTACCATTAGT 158517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 48116 ATATAACTTCTCAAATTCATCCCC-ATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| | |||||||| || || | ||| || ||||| || |||||||| || |||| Sbjct 158144 ATATAATTCCTCAAATTTTTCTCCGAAACA-ATCTTCTAATCCGGGACATTCCTTGGGAC 158202 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 ||||||| | |||||| |||| | | ||||| |||| |||| ||| || ||||| | Sbjct 158203 ACATCAAAGTCCAATCAGAATCAGTCTCAACTCTTTTCATGAATAGATCAGGAATCCAGA 158262 Query 48235 GAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 | || ||| |||| ||| | || |||| ||| || ||| ||||| || ||||| Sbjct 158263 GGGC-ATAGAATAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTT 158319 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || ||||| |||||||| | || || ||||||||| | || || |||| | || Sbjct 158812 CAGGTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATA 158871 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 | |||||| || || | | ||||||||| ||| || || |||| ||| | |||| Sbjct 158872 TCATATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATT 158931 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||||| | |||||||| || || | || || || |||| | ||||||| | ||| Sbjct 158932 AACATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCC 158991 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || || || ||||| | ||||||||||| Sbjct 158992 AGAGTCTTGAATCCAAAGAAAGAATATGAAAAGTC 159026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077799699680