Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq888 199 3e-45 seq1973 163 2e-34 seq285 114 1e-19 seq908 105 5e-17 seq1854 102 7e-16 seq812 100 2e-15 seq108 87.8 1e-11 >seq888 Length=55613 Score = 199 bits (220), Expect = 3e-45 Identities = 482/721 (67%), Gaps = 28/721 (4%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||| | ||||||| || || |||||||| || || | | ||||| || || Sbjct 5444 GCTCTTCGAAGATTAAGAACAGCATGTGAAAGAGCGAAGAGAACATTATCATCAAGTGCT 5503 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTT-- 552012 || | |||||||| |||||| | ||| ||| |||| ||| || ||| | || Sbjct 5504 GAAGCTGTGATTGAAGTTGATTCACTTCATGAAGGAGTTGACTATCAT--GCCAAGTTGA 5561 Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 | || || ||| ||||| | ||| ||||||| || | || ||| | |||||||| | Sbjct 5562 CAAGAGCTCGATTCGAAGAATTGTGTGCTGATCTATTCCGGAAGACATTGGAACCAGTGG 5621 Query 552073 AACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 | | | | | ||||| | || || || ||||| | | || || | || | |||| Sbjct 5622 AGAAGGCTCTTCGAGATGCGAAAATGGACAAATCATCAATTCAAGACGTCGTTTTGGTTG 5681 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAA-----TGTTAAGTTCTTATTTCAATGG 552187 | |||||||| ||||||| | | | |||| || | | ||||| | || Sbjct 5682 GAGGATCTACTCGAATTCCACGAGTACA-GAAACTTCTTGCTGACTTCTT----CGGAGG 5736 Query 552188 TAAAAAATTA---AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAAT 552244 || || | | || || | ||||| ||||| || ||||||||||| || ||| | Sbjct 5737 AAAGGAACTCTGTACTGGAA---TCAATCCCGATGAAGCCGTTGCCTATGGAGCTGCAGT 5793 Query 552245 TCAAGCAGCTATTCTTTCTGGA---CAAACTGATGAAAAACTACAAAATATTGTACTTGT 552301 ||||| |||||||| || ||| ||| || || | | | || || |||| || Sbjct 5794 ACAAGCTGCTATTCTATCAGGAGTTCAA---GACTCAACAGTCAAGGATGTTCTACTCGT 5850 Query 552302 AGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTAT 552361 |||||| |||| || || | || | || || | |||||| ||||||| ||| | Sbjct 5851 TGATGTTGCTCCACTTTCATTGGGAATCGAGACTGCTGGAGGAGTTATGACATCACTTGT 5910 Query 552362 CGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT-ATTTTCTACGTATTCAGATA 552420 ||||| |||||| ||||||| | | | | | ||| || || ||| | |||| Sbjct 5911 AGATAGGAATACTCGTATTCCTACTCGAGC-TATGAAGACATTCTCCACTTATGCTGATA 5969 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 ||||| | | || | |||||| | || ||||||||| || | | || || |||||| Sbjct 5970 ATCAACCAGGAGTATCCATTCAAGTATTCGAAGGAGAACGAGCACTTACCAAGGATAATC 6029 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 |||||||||| | || | || || ||||||||||| || | ||||| || || | Sbjct 6030 ATCAACTTGGAAACTTCGAACTATCTGGAATTCCTCCTGCACCAAGAGGAGTTCCTCAGA 6089 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAAT 552600 ||||||| ||||| || ||||| ||||||||| || |||||||||| ||||| | Sbjct 6090 TTGAAGTCGTATTCGAGATTGATGCAAATGGAATTCTGGCTGTGACTGCTACGGATAAGT 6149 Query 552601 C 552601 | Sbjct 6150 C 6150 >seq1973 Length=12115 Score = 163 bits (180), Expect = 2e-34 Identities = 276/396 (70%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA--- 552266 ||||| ||||| |||||||||||||| || ||| ||||||| |||||||| || ||| Sbjct 1364 AATCCCGATGATGCTGTTGCCTATGGAGCTGCAGTTCAAGCTGCTATTCTATCAGGAGTT 1305 Query 552267 CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || | | | || || |||| || |||||| |||| || || | || Sbjct 1304 CAA---GACTCAACAGTCAAGGATGTTCTACTCGTTGATGTTGCTCCACTTTCATTGGGA 1248 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | |||||| ||||||| ||| |||||||||||||| ||||| | Sbjct 1247 ATCGAGACTGCTGGAGGAGTTATGACATCACTTGTCGATAGAAATACTCGCATTCCAACT 1188 Query 552387 AAAAAATCTCGTGT-ATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 | | | | ||| || || ||| | ||||||||| | | ||| | |||||| | Sbjct 1187 CGAGC-TATGAAGACATTCTCCACTTATGCTGATAATCAACCAGGAGTTTCCATTCAAGT 1129 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 || ||||||||| || | || || |||||| || ||||||| | || | || Sbjct 1128 ATTCGAAGGAGAACGAGCTCTTACCAAGGATAATCATTAACTTGGAAACTTCGAACTATC 1069 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || ||||||||||| || | ||||| || || |||||||| ||||| || ||||| Sbjct 1068 TGGAATTCCTCCTGCACCAAGAGGAGTTCCTCAGATTGAAGTCTTATTCGAGATTGATGC 1009 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||||| | |||||||||| ||||| || Sbjct 1008 AAATGGAATTCTTGCTGTGACTGCTACGGATAAGTC 973 Score = 105 bits (116), Expect = 5e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 2956 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAGAATGGACG 2897 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||||||||| |||| || ||||| || || ||| | ||||| Sbjct 2896 AGTTGAAATCATCGCGAATGATCAAGGAAACAAGACCACTCCTTCCTACGTTGCATTCAC 2837 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||| || | || || ||||||| | | ||||| ||| Sbjct 2836 TGATGATGAACGACTTGTTGGAGACTCTGCTAATGATCAAGCTGCAAGGAATCCAGTCAA 2777 Query 550171 TACTATTTTTGATGCTAA 550188 |||||| || |||||||| Sbjct 2776 TACTATCTTCGATGCTAA 2759 Score = 102 bits (112), Expect = 7e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || ||||| || || || ||||| || ||||| ||||| || || || Sbjct 2182 GGAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGA 2123 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||||||||||||||| Sbjct 2122 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGC 2063 Query 550516 ACTTGCATATGGACTTGATAA 550536 | | ||||||||| | || || Sbjct 2062 ATTGGCATATGGATTGGACAA 2042 >seq285 Length=161344 Score = 114 bits (126), Expect = 1e-19 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | |||||||| Sbjct 86675 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAAAATGGACG 86734 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||||||||| |||| ||| ||||| || || ||| | ||||| Sbjct 86735 AGTTGAAATCATCGCGAATGATCAAGGAAACAAAACCACTCCTTCCTACGTTGCATTCAC 86794 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||| || | || || ||||||| | | ||||| ||| Sbjct 86795 TGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAAGCTGCAAGGAATCCAGTCAA 86854 Query 550171 TACTATTTTTGATGCTAA 550188 |||||| || |||||||| Sbjct 86855 TACTATCTTCGATGCTAA 86872 >seq908 Length=54638 Score = 105 bits (116), Expect = 5e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 37182 AGCAATCGGAATCGATCTGGGAACGACTTATTCATGTGTTGGAGTCTACCAGAATGGACG 37241 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||||||||| |||| || ||||| || || ||| | ||||| Sbjct 37242 AGTTGAAATCATCGCGAATGATCAAGGAAACAAGACCACTCCTTCCTACGTTGCATTCAC 37301 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||| || | || || ||||||| | | ||||| ||| Sbjct 37302 TGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAAGCTGCAAGGAATCCAGTCAA 37361 Query 550171 TACTATTTTTGATGCTAA 550188 |||||| || |||||||| Sbjct 37362 TACTATCTTCGATGCTAA 37379 Score = 102 bits (112), Expect = 7e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || ||||| || || || ||||| || ||||| ||||| || || || Sbjct 37956 GGAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGA 38015 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||||||||||||||| Sbjct 38016 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGC 38075 Query 550516 ACTTGCATATGGACTTGATAA 550536 | | ||||||||| | || || Sbjct 38076 ATTGGCATATGGATTGGACAA 38096 >seq1854 Length=14611 Score = 102 bits (112), Expect = 7e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || ||||| || || || ||||| || ||||| ||||| || || || Sbjct 14418 GGAAGCCGTGATTACCGTACCTGCCTACTTCAATGATTCTCAACGACAAGCAACGAAGGA 14477 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| | | || |||| || || ||| ||||| ||||||||||||||||||||||| Sbjct 14478 TGCAGCAACCATCTCTGGTCTCAAGTGTCTACGTATCATCAATGAACCTACTGCTGCTGC 14537 Query 550516 ACTTGCATATGGACTTGATAA 550536 | | ||||||||| | || || Sbjct 14538 ATTGGCATATGGATTGGACAA 14558 Score = 100 bits (110), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 13606 AGCAATCGGAATCGATCTGGGAACGACTTATTCGTGTGTTGGAGTCTACCAGAATGGACG 13665 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||||||||| |||| || ||||| || | ||| | ||||| Sbjct 13666 AGTTGAAATCATCGCGAATGATCAAGGAAACAAGACCACTCCTTCATGCGTTGCATTCAC 13725 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||| || | || || ||||||| | | ||||| ||| Sbjct 13726 TGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAAGCTGCAAGGAATCCAGTCAA 13785 Query 550171 TACTATTTTTGATGCTAA 550188 |||||| || |||||||| Sbjct 13786 TACTATCTTCGATGCTAA 13803 >seq812 Length=62635 Score = 100 bits (110), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 425 AGCAATCGGAATCGATCTGGGAACGACTTATTCGTGTGTTGGAGTCTACCAGAATGGACG 366 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||||||||| |||| || ||||| || | ||| | ||||| Sbjct 365 AGTTGAAATCATCGCGAATGATCAAGGAAACAAGACCACTCCTTCATGCGTTGCATTCAC 306 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | ||||| || | || || ||||||| | | ||||| ||| Sbjct 305 TGATGATGAACGACTTGTTGGAGACTCTGCTAAGGATCAAGCTGCAAGGAATCCAGTCAA 246 Query 550171 TACTATTTTTGATGCTAA 550188 |||||| || |||||||| Sbjct 245 TACTATCTTCGATGCTAA 228 >seq108 Length=280030 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| ||||| | |||||||| || ||||| || || || || ||||| || || || || Sbjct 273679 GGACGCAGTGGTCACTGTACCCGCGTATTTCAACGATTCGCAGCGTCAGGCCACCAAGGA 273620 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 | | ||| ||| |||||||||||||| || || || ||||| || || ||||| || || Sbjct 273619 TTCGGGAGCTATCGCTGGACTTAATGTCCTCCGCATCATCAACGAGCCCACTGCAGCCGC 273560 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 273559 TATCGCGTACGGTCTCGACAA 273539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029062673541880