Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq138 102 2e-16 seq88 91.5 3e-13 >seq138 Length=243692 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||| || ||||||| || |||| || |||||||| || |||||||| ||||| ||||| Sbjct 113904 GAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGCCGCGAACGAGCCCGAGAA 113845 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 |||||||||||| || ||||| ||| |||| | ||| |||| || | |||||||| Sbjct 113844 GAAGATGCCCTCGACGCAGGCGAAGGCGATGAGACGCTCCGCGAAGGACGACTTCTTGTC 113785 Query 48307 TGAGATCCA 48315 | |||||| Sbjct 113784 AGCGATCCA 113776 >seq88 Length=301248 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 212925 TCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTG 212984 ||||| || ||||| || || | ||||| ||| || || || || |||||||| ||||| Sbjct 192290 TCACCAGAAAGCACTCTTCTGTTGTAAATGTTGGATGTATACGGTTCGATGCTTTCGTTA 192349 Query 212985 TTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTC 213044 || || |||||||||||||| || || ||||| ||||| | ||||||| || | | Sbjct 192350 TTTCCTAGAATCTGTGCAGTCGATGCAGTAGGCATAGGAGCTAGCAGGAGAGAATTTCGC 192409 Query 213045 ACTCCGTG 213052 || ||||| Sbjct 192410 ACGCCGTG 192417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931481425966080