Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq138 84.2 4e-11 >seq138 Length=243692 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/123 (79%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 ||||| || | ||||| || ||| || ||||||||||| ||| || ||||| ||||| Sbjct 113806 GAGCGTCTCATCGCCTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGGC 113864 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACT-TTTCCAACGAGCTC 25992 |||||||||||| ||| || || |||| ||||||||| || ||| ||| || |||||| Sbjct 113865 CATCTTCTGGCTGAAGAAG-AGAGGACTCATGCCCGGACT-CACTCATTCGAATGAGCTC 113922 Query 25993 ATC 25995 ||| Sbjct 113923 ATC 113925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928793574209280