Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq534 86.0 1e-11 >seq534 Length=97391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||||||||| || || || |||||||| |||||||| || ||||| || ||||| || Sbjct 39070 AATTGTTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGG 39011 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || ||| || || || || || || || | || || || || || ||||| || Sbjct 39010 ATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTG 38951 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || | ||| ||||||||| Sbjct 38950 CCAGTGAGGGTCTTGACGAAGATCTGCATT 38921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905086081749600