Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq152 122 1e-21 seq176 120 4e-21 seq242 111 2e-18 seq138 104 3e-16 seq203 95.1 1e-13 seq8 95.1 1e-13 >seq152 Length=233279 Score = 122 bits (134), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 228181 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 228122 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 228121 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 228062 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 228061 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 228002 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| || ||||||| | |||||| || Sbjct 228001 GAACCTGCTTGAGGACACGGTAGATGTAGACCGAGTAGGA 227962 >seq176 Length=214660 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254357 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTG 1254416 ||| | | ||| ||||| || || |||||||| ||||| | ||| || |||||| Sbjct 65512 CCGGGAAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTG 65571 Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476 || |||| || |||||| |||||| | |||| | |||| | |||||| |||||| Sbjct 65572 TTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACAAAC 65631 Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536 |||||||||| |||||| | |||| ||| | || ||||||||| ||||||||||| Sbjct 65632 GAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGG 65691 Query 1254537 ACCTTGTAGATGAACGACGAGTACGA 1254562 || ||||||| | |||||| || Sbjct 65692 ACACGGTAGATGTAGACCGAGTAGGA 65717 >seq242 Length=178806 Score = 111 bits (122), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || || |||||||| ||||| | || Sbjct 98094 GCTTGGCAAGCTCTCCGGGGAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGA 98035 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || |||||| |||||| | |||| | |||| | Sbjct 98034 TGGTCGATCGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGA 97975 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | |||| ||| | || |||||||| Sbjct 97974 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGT 97915 Query 1254523 GCACCTGCTTG 1254533 | ||||||||| Sbjct 97914 GAACCTGCTTG 97904 >seq138 Length=243692 Score = 104 bits (114), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 ||| ||||||||||| || | |||||| ||||| |||||||| ||| ||||||||| Sbjct 113904 GAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGCCGCGAACGAGCCCGAGAA 113845 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 ||||||||||||||| ||| ||| ||||||| ||||| || |||| Sbjct 113844 GAAGATGCCCTCGACGCAGGCGAAGGCGATGAGACGCTCCGCGAAGG 113798 >seq203 Length=201139 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 |||||||| |||| || |||||| |||||| | |||| | |||| | |||||| Sbjct 201138 CGCTTGTTGTAGTGAGCGAGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTC 201079 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 || || |||||||||| |||||| | |||| ||| | || ||||||||| |||||| Sbjct 201078 ACGAAAGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGC 201019 Query 1254531 TTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||| || ||||||| | |||||| || Sbjct 201018 TTGAGGACACGGTAGATGTAGACCGAGTAGGA 200987 >seq8 Length=620696 Score = 95.1 bits (104), Expect = 1e-13 Identities = 92/116 (79%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 733152 GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCAC 733211 || |||||||| | || | | ||| ||| ||||||||||||| | |||||||||||| Sbjct 604738 GAAGACATGCCGT--TCAC-GTGCGAGGGCATCACGCCCGACATCATCATCAACCCGCAC 604794 Query 733212 GCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGT 733267 ||| |||| ||||| |||||||| ||| | || ||||| ||||| ||||||||| Sbjct 604795 GCCGTCCCCTCGCGAATGACCATCGGCCATCTGATCGAGTGCCTCCAGGGCAAGGT 604850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106777130618604