Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq131 113 4e-20 >seq131 Length=252658 Score = 113 bits (124), Expect = 4e-20 Identities = 138/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 34476 CTTTGTCGGGTAA-ATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGA 34534 ||| || ||||| ||||| || || | || ||||| || || || | ||||||| ||| Sbjct 225135 CTTGGTGGGGTAGGATGGCGGG-CGCTCGAGTGCCTTCGCTATGTCCGACATGTTGGCGA 225077 Query 34535 TGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGT 34594 |||| |||||||||||||||||||| || |||||||||||| || ||||| |||| Sbjct 225076 TGACTGTCTTGATGCCGTTGCCCTTGCCCTCGACCTTGGCGAGAATCTTGGGCATCTTGT 225017 Query 34595 AGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654 |||| ||||||| || || |||||| ||||| | || |||| || |||| || Sbjct 225016 AGCGATAGAACGGATCGAGGACTCCGCGGTTCACGTTGATAG---CCATTGTTGCTGCTG 224960 Query 34655 TTACT 34659 || || Sbjct 224959 TTGCT 224955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412819400991116