Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq152 165 1e-34 seq242 161 2e-33 seq8 104 4e-16 seq3021 102 1e-15 seq176 102 1e-15 seq138 95.1 2e-13 >seq152 Length=233279 Score = 165 bits (182), Expect = 1e-34 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 228220 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 228161 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || |||||||| ||| Sbjct 228160 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 228101 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || |||||||| Sbjct 228100 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 228043 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| | ||| ||| | || ||||||||| ||||||||||| || Sbjct 228042 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGAGGAC 227986 >seq242 Length=178806 Score = 161 bits (178), Expect = 2e-33 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 98133 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGGA 98074 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || || |||||||| ||||| | ||| || |||||||| ||| Sbjct 98073 GGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 98014 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| | |||| | |||||| || |||||||| Sbjct 98013 GAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACGAACGAGTT 97956 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1485699 |||||||||||| | ||| ||| | || ||||||||| ||||||||| Sbjct 97955 CATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTG 97904 >seq8 Length=620696 Score = 104 bits (114), Expect = 4e-16 Identities = 94/116 (81%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 653717 GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCAC 653776 || || ||||||| || | | ||| |||| ||||||||||||| |||||||||||||| Sbjct 604738 GAAGACATGCCGT--TCAC-GTGCGAGGGCATCACGCCCGACATCATCATCAACCCGCAC 604794 Query 653777 GCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGT 653832 ||| |||| ||||| |||||||| ||| | |||| ||| ||||| ||||||||| Sbjct 604795 GCCGTCCCCTCGCGAATGACCATCGGCCATCTGATCGAGTGCCTCCAGGGCAAGGT 604850 >seq3021 Length=2862 Score = 102 bits (112), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 129 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGCTCTCCGGGAA 70 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| ||||| || || |||||||| ||||| Sbjct 69 GGATGAGGCGGACCGCCGTCTGGATTTCGCG 39 >seq176 Length=214660 Score = 102 bits (112), Expect = 1e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 1485523 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTG 1485582 ||| | | ||| ||||| || || |||||||| ||||| | ||| || |||||| Sbjct 65512 CCGGGAAGGATGAGGCGGACCGCCGTCTGGATTTCGCGAGAAGAGATGGTCGATCGCTTG 65571 Query 1485583 TT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 || |||| ||| || ||| |||||| | |||| | |||| | |||||| |||| Sbjct 65572 TTGTAGTGAGCG--AGACGGGAGGCCTCACCGGCGATTCTCTCGAAGACGTCGTTCACAA 65629 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700 ||||||||||||||||||| | ||| ||| | || ||||||||| |||||||||| Sbjct 65630 ACGAGTTCATGATCGACATGGCCTTGGAGGAAACTCCGGTGTCGGGGTGAACCTGCTTGA 65689 Query 1485701 GCAC 1485704 | || Sbjct 65690 GGAC 65693 >seq138 Length=243692 Score = 95.1 bits (104), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| ||||||||||| || | |||||| ||||| |||||||| ||| ||||||||| Sbjct 113904 GAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGCCGCGAACGAGCCCGAGAA 113845 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA 794480 ||||||||||||||| ||| ||| ||| ||| ||||| || || Sbjct 113844 GAAGATGCCCTCGACGCAGGCGAAGGCGATGAGACGCTCCGCGAA 113800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915777075436868