Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq520 100 2e-16 seq115 91.5 1e-13 seq534 89.7 3e-13 >seq520 Length=99801 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 59413 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59354 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | || ||||||||| |||| ||| |||||||| || || Sbjct 59353 GGCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59294 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 59293 CAGGGTCTTGACGAAGATCTGCATG 59269 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 59716 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59657 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | || ||||||||| |||| ||| |||||||| || || Sbjct 59656 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59597 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 59596 CAGGGTCTTGACGAAGATCTGCATG 59572 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 60018 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59959 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | || ||||||||| |||| ||| |||||||| || || Sbjct 59958 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59899 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 59898 CAGGGTCTTGACGAAGATCTGCATG 59874 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| |||| |||||||| | || | ||||||||||| | || || Sbjct 60320 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 60261 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | || ||||||||| |||| ||| |||||||| || || Sbjct 60260 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 60201 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 60200 CAGGGTCTTGACGAAGATCTGCATG 60176 >seq115 Length=268835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||||||||| |||| ||||| || | || | ||||||||||| | || || Sbjct 194807 CTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 194866 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | || ||||||||| || | ||| |||||||| || || Sbjct 194867 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGT 194926 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || |||||||||||| Sbjct 194927 CAGGGTCTTGACGAAGATCTGCATG 194951 >seq534 Length=97391 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 ||| || ||||||||||||| || |||||||| | || | |||||||| || | || Sbjct 39068 TTGTTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGGAT 39009 Query 34891 TTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 || |||||| | || | || ||||||||| || | ||| |||||||| || Sbjct 39008 CTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCC 38949 Query 34951 CGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || ||||||||||| Sbjct 38948 AGTGAGGGTCTTGACGAAGATCTGCAT 38922 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| || |||||||| | || | ||||||||||| | || || Sbjct 37273 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37214 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || ||||||||| || | ||| |||||||| || |||||| Sbjct 37213 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 37154 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| |||||| Sbjct 37153 GTCTTGACGAAGATTTGCATG 37133 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| || |||||||| | || | ||||||||||| | || || Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || ||||||||| || | ||| |||||||| || ||||| Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 37493 GTCTTGACGAAGATCTGCAT 37474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325675287091028