Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq152 140 5e-27 seq242 129 8e-24 seq176 104 3e-16 seq138 96.9 5e-14 seq8 89.7 7e-12 >seq152 Length=233279 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 227962 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 228018 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | |||||||||||||||||||||| || |||||| | |||| | ||| Sbjct 228019 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGAGAATC 228075 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 228076 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 228135 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || || ||||| ||| | | ||| || || |||| |||||||||||| ||| Sbjct 228136 ATCCAGACGGCGGTCCGCCTCATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCTGAG 228195 Query 725136 GGCACCA 725142 ||||||| Sbjct 228196 GGCACCA 228202 >seq242 Length=178806 Score = 129 bits (142), Expect = 8e-24 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 724925 CAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAA 724984 ||||||||| |||||| |||| | |||||||| | |||||||||||||||| Sbjct 97904 CAAGCAGGTTCACCCCGACACCGGAGTT---TCCTCCAA---GGCCATGTCGATCATGAA 97957 Query 724985 CTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTC 725044 |||||| || |||||| | |||| | |||| | |||||| || || || | || Sbjct 97958 CTCGTTCGTGAACGACGTCTTCGAGAGAATCGCCGGTGAGGCCTCCCGTCTCGCTCACTA 98017 Query 725045 CAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCG 725104 ||||||||| || ||| | ||||| |||||||| || || ||||| ||| | | Sbjct 98018 CAACAAGCGATCGACCATCTCTTCTCGCGAAATCCAGACGGCGGTCCGCCTCATCCTCCC 98077 Query 725105 CGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || |||| |||||||||||| |||||||||| Sbjct 98078 CGGAGAGCTTGCCAAGCACGCCGTCTCTGAGGGCACCA 98115 >seq176 Length=214660 Score = 104 bits (114), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||| || |||||| || ||||||||||| |||||| |||| | Sbjct 65717 TCCTACTCGGTCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACCGGAGTT--- 65661 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | ||||||||||||||||||||||||| |||||| | |||| | ||| Sbjct 65660 TCCTCCAA---GGCCATGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAGAGAATC 65604 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||| || || || | || ||||||||| || ||| | ||||| Sbjct 65603 GCCGGTGAGGCCTCCCGTCTCGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAA 65544 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 |||||||| || || ||||| ||| | | ||| Sbjct 65543 ATCCAGACGGCGGTCCGCCTCATCCTTCCCGG 65512 >seq138 Length=243692 Score = 96.9 bits (106), Expect = 5e-14 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || ||||| ||| ||| ||| ||| |||||||||||||||| ||||||||| || Sbjct 113799 CTTCGCGGAGCGTCTCATCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 113858 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||||| ||||| |||||| | || ||||||||||| || Sbjct 113859 CGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCCGGACT 113903 >seq8 Length=620696 Score = 89.7 bits (98), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 1600559 ACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGC 1600618 ||||||||| ||||| ||| |||| | ||| |||||||| ||||| |||| ||||||| Sbjct 604850 ACCTTGCCCTGGAGGCACTCGATCAGATGGCCGATGGTCATTCGCGAGGGGACGGCGTGC 604791 Query 1600619 GGGTTGATCACAATGTCGGGCGTG 1600642 |||||||| | |||||||||||| Sbjct 604790 GGGTTGATGATGATGTCGGGCGTG 604767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177385654490744