Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq534 98.7 1e-15 >seq534 Length=97391 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| || || || ||||||||||| || ||||||||||| Sbjct 38922 TTCCTCCTCTGAGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 38863 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| | || || ||||| || || || || ||||| | |||||| || || | Sbjct 38862 AAAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGG 38803 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| | || | Sbjct 38802 GGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGA 38743 Query 134665 CGTCGAGAGTAATGGTTTTACC 134686 | ||||| || ||||| || || Sbjct 38742 CCTCGAGGGTGATGGTCTTGCC 38721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505370527278240