Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq60 125 1e-23 seq88 107 3e-18 >seq60 Length=331869 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | |||||| | || || ||||| |||||||| || | ||| | || || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| || || |||| |||||||||| | ||| ||||| || || || | ||| ||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||||| ||||| || || || || |||| | |||||| | |||||| Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 || || || ||||| | ||||||||||||| ||||| | || ||||||| || Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 ||| ||| ||||| | |||||||||||| ||||| || || | |||| |||| |||| Sbjct 158379 ACTGCATGATATCTGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCAGGTCTCTTAT 158438 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 ||||||| ||||| | ||| ||||||| || || | |||| ||||| |||| || | Sbjct 158439 TTCCTCCTTGATCCACATATTTGGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGTC 158498 Query 69809 CATTAGATTTACCATTTGT 69827 |||| || ||||||| || Sbjct 158499 CATTCGAAGTACCATTAGT 158517 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/177 (73%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||| ||||| || ||| || ||||| |||||||| || ||||||||||| | | Sbjct 158154 TCAAATTTTTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACACATCAAAGTC 158213 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || || |||| || ||||| |||||| |||||||| |||||||| || || ||| || Sbjct 158214 CAATCAGAATCAGTCTCAACTCTTTTCATGAATAGATCAGGAATCCAGAGGGC-ATAGAA 158272 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA-GAAACT 69691 ||||| | | ||| | ||| || ||| ||||| || ||| | || |||||| Sbjct 158273 TAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGAGGAAACT 158329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 69088 AATGCATCTGCCAATCCCTGAAC-CCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 |||| ||| ||||||||||| || |||||| || || |||| |||||||||||| || Sbjct 157022 AATGTATCAGCCAATCCCTGTACTCCCAAT-CCAATCGGTCGATGTCTCTTATTACTCCT 157080 Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 ||| ||||| ||||| ||||| ||||| | ||| || || || || ||||| || Sbjct 157081 TTCTGCTTCGGGAATTGGATAGTAATTCACATCAATGATCTTGTTCAGATTGCG 157134 >seq88 Length=301248 Score = 107 bits (118), Expect = 3e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 ||||||| ||||| | ||||||||| || ||||| || || | |||| |||||||||| Sbjct 194411 ACTCCATGATATCTGCATGCCATGGCTCAAGATAGATAGCGAAAGCTCCGGGTCGTTTAT 194470 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 |||| |||||||||| |||| |||| ||||| || | ||| |||||||||| Sbjct 194471 TTCCACCCTGATCTACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGG 194522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 69088 AATGCATCTGCCAATCCCTGAAC-CCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 |||| ||| ||||||||||| || |||||| |||||||||| |||||||||||| || Sbjct 193028 AATGTATCAGCCAATCCCTGTACTCCCAAT-CCGATAGGTCGATGTCTCTTATTACTCCT 193086 Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || ||||| || || ||||| || || | ||| || || ||||| ||||| || Sbjct 193087 CTCTGCTTCAGGGATTGGATAGTAGTTCACATCGATGATCTTATTCAGATTCCG 193140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 69538 TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACT 69597 || |||| ||| |||||||| || |||||||| | | ||| | ||||| | | |||| Sbjct 194040 TCGTCCAGTCCGGGACATTCCTTGGGACACATAAGCGTCCATTCGGCATCAGCTTCAACT 194099 Query 69598 CGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 | ||||| ||||||||||||||||| ||||| ||| |||||||||| Sbjct 194100 CTCTTCATGAATAGATCGGGAATCCAGAGAGC-ATAGAAGAGATCTC 194145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686870916979680