Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq88 87.8 2e-12 >seq88 Length=301248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 111213 CTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 111272 |||||||||| | | ||||| ||||| || || | ||||||||| ||| ||||| Sbjct 193236 CTTCATTGACGAATCTGGGAAGAGCGATGGACGCGAGATTGCAAACGGCCACTTCATCAG 193295 Query 111273 TATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCT 111332 || ||||| | || || ||||| | ||||||| ||| || || |||| ||||| Sbjct 193296 GGGATGAATACTCCACGATCTCCGTACACAGATTGGAACACTTGATTGTACCCAGATTCT 193355 Query 111333 TTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 ||||||||||||| ||| || || ||| ||||| Sbjct 193356 GTTGGTTACTCTTCGCGTTACAGGCGTCC-TGTAG 193389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627997364035200