Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq138 98.7 1e-15 seq306 89.7 6e-13 >seq138 Length=243692 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130043 CGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAG 130102 || |||||||| |||||||| || || |||||||| || | |||||||| |||| Sbjct 113930 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTCTTCTTCAGCCAG 113871 Query 130103 AAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGA 130162 || || || || ||||| ||||||||||| ||||| || || ||||| || | |||| Sbjct 113870 AAGATGGCCGCGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGATGAGA 113811 Query 130163 CGCTCAGCAAAGGA 130176 ||||| || ||||| Sbjct 113810 CGCTCCGCGAAGGA 113797 >seq306 Length=152290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 130043 CGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAG 130102 || |||||||| |||||||| || || |||||||| || | ||||||| |||| Sbjct 92700 CGCGAGATGAGCTCATTCGAATGAGTGAGTCCGGGCATGAGTCCTCTTTTCTTCAGCCAG 92759 Query 130103 AAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGA 130162 ||||| || ||| || || ||||||||||| ||||| || |||||||| |||| | Sbjct 92760 AAAATGGCGGCAAAAGATCCCGAGAAGAAGATTCCCTCAACGCACGCGAATGCAATCAAT 92819 Query 130163 CGCTCAGCAAAGGA 130176 | |||||| || || Sbjct 92820 CTCTCAGCGAATGA 92833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618401093298720