Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq88 96.9 4e-15 seq138 86.0 7e-12 seq306 84.2 3e-11 >seq88 Length=301248 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||||||| |||||||| ||| ||||| ||||| |||||| |||||||||| Sbjct 193383 GACGCCTGTAACGCGAAGAGTAACCAACAGAATCTGGGTACAATCAAGTGTTCCAATCTG 193324 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 ||||| || ||| |||| | | || | ||||| ||| || || || ||||| || Sbjct 193323 TGTACGGAGATCGTGGAGTATTCATCCCCTGATGAAGTGGCCGTTTGCAATCTCGCGTCC 193264 Query 105065 ATCGCTCTCCCCA 105077 |||||||| |||| Sbjct 193263 ATCGCTCTTCCCA 193251 >seq138 Length=243692 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 94786 AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 |||||| ||||| || ||||| ||| |||| || || || || ||||| ||||||||| Sbjct 113791 AAGTCG---TCCTTCGCGGAGCGTCTCATCGCCTTCGCCTGCGTCGAGGGCATCTTCTTC 113847 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || || ||| || || | ||||| |||||| |||| |||||||| || ||| Sbjct 113848 TCGGGCTCGTTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCCGGACTCACT 113907 Query 94906 TTCTCCAACGAGCTTATCTCTCG 94928 || || ||||| ||||| || Sbjct 113908 CATTCGAATGAGCTCATCTCGCG 113930 >seq306 Length=152290 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||| || | | ||||| ||||| |||||||| ||||||||||| || || Sbjct 92833 TCATTCGCTGAGAGATTGATTGCATTCGCGTGCGTTGAGGGAATCTTCTTCTCGGGATCT 92774 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| |||| ||||| ||||| |||| |||||||| || ||| || || Sbjct 92773 TTTGCCGCCATTTTCTGGCTGAAGAAAAGAGGACTCATGCCCGGACTCACTCATTCGAAT 92714 Query 94915 GAGCTTATCTCTCG 94928 ||||| ||||| || Sbjct 92713 GAGCTCATCTCGCG 92700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583228633166880