Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq534 120 3e-22 seq520 120 3e-22 seq115 107 2e-18 seq88 100 3e-16 >seq534 Length=97391 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || || ||||| ||| | || | ||| | || | |||||||| Sbjct 38721 GGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGACACCATCGAGAACGTCAAGGCTAAG 38780 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||| || || ||||||||| | | || || ||||| ||||| Sbjct 38781 ATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAGAGATTGATCTTCGCTGGAAAGCAG 38840 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || || || | ||||| || |||| ||||||||||| || ||||| Sbjct 38841 CTTGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTG 38900 Query 27613 GTCTTGCGTCT 27623 || | ||||| Sbjct 38901 GTGCTCCGTCT 38911 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | Sbjct 38921 AATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 38980 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | |||||||| || ||||| ||||||||||| || || ||||| Sbjct 38981 CGACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGAATCCCCCCTGACCA 39040 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||| | | || || || ||||| ||| || Sbjct 39041 GCAGAGATTGATCTTCGCCGGTAAACAATTC 39071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| || || || ||||| ||| | Sbjct 37134 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGGCCTCC 37193 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| || || |||||| Sbjct 37194 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 37253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || || ||| || Sbjct 37254 CAGAGATTGATCTTCGCCGGTTAG 37277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | Sbjct 37473 AATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTC 37532 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || ||||||||||||||||| || || ||||| Sbjct 37533 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 37592 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | | || || || ||| || Sbjct 37593 GCAGAGATTGATCTTCGCCGGTTAG 37617 >seq520 Length=99801 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | Sbjct 59270 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 59329 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 59330 GATACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 59389 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || |||||| Sbjct 59390 CAGAGACTTATCTTCGCCGGTAAG 59413 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | Sbjct 59573 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 59632 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 59633 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 59692 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || |||||| Sbjct 59693 CAGAGACTTATCTTCGCCGGTAAG 59716 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | Sbjct 59875 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 59934 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 59935 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 59994 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || |||||| Sbjct 59995 CAGAGACTTATCTTCGCCGGTAAG 60018 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | Sbjct 60177 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCC 60236 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| ||||| |||||| Sbjct 60237 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAG 60296 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || |||||| Sbjct 60297 CAGAGACTTATCTTCGCCGGTAAG 60320 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| ||||| ||||| || || || || || ||||| ||| | Sbjct 58868 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTCGAGGTCGAGGCTTCC 58927 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| ||||| || ||| Sbjct 58928 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCAG 58987 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || ||| || Sbjct 58988 CAGAGACTTATCTTCGCCGGTTAG 59011 >seq115 Length=268835 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | Sbjct 194950 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 194891 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||||||||| || || ||| Sbjct 194890 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAG 194831 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || |||||| Sbjct 194830 CAGAGACTCATCTTCGCCGGTAAG 194807 >seq88 Length=301248 Score = 100 bits (110), Expect = 3e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 |||||| |||||||| |||||||| || |||| || | |||| ||||| ||||| || Sbjct 193264 GGACGCGAGATTGCAAACGGCCACTTCATCAGGGGATGAATACTCCACGATCTCCGTACA 193323 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || ||| ||| |||| ||||||||||| || | ||||| ||| ||||| || ||||| Sbjct 193324 CAGATTGGAACACTTGATTGTACCCAGATTCTGTTGGTTACTCTTCGCGTTACAGGCGTC 193383 Query 81027 CTTGTAG 81033 | ||||| Sbjct 193384 C-TGTAG 193389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570278947381440