Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq534 118 3e-21 seq520 102 2e-16 seq115 95.1 3e-14 >seq534 Length=97391 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| |||||||| || |||| ||||| || | | ||| | ||||| Sbjct 38905 AGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 38846 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || ||||| || || || || ||||| || Sbjct 38845 TCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCC 38786 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| || || || | ||||| ||| Sbjct 38785 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTC 38726 Query 225682 TTGCC 225686 ||||| Sbjct 38725 TTGCC 38721 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || ||||| || || || || |||||||| |||||||| | Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||||| |||| || || || | ||||| |||||||| || | | Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | |||||| Sbjct 37493 GTCTTGACGAAGATCTGCATT 37473 >seq520 Length=99801 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||||| || |||||||| || || || |||||||| |||||||| Sbjct 59716 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59657 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||| |||| || || || | ||||| |||||||| || Sbjct 59656 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59597 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 59596 CAGGGTCTTGACGAAGATCTGCAT 59573 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||||| || |||||||| || || || |||||||| |||||||| Sbjct 60018 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59959 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||| |||| || || || | ||||| |||||||| || Sbjct 59958 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59899 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 59898 CAGGGTCTTGACGAAGATCTGCAT 59875 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||||| || |||||||| || || || |||||||| |||||||| Sbjct 60320 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 60261 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||| |||| || || || | ||||| |||||||| || Sbjct 60260 GGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 60201 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 60200 CAGGGTCTTGACGAAGATCTGCAT 60177 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||||| || |||||||| || || || |||||||| |||||||| Sbjct 59413 CTTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTT 59354 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||||||| || |||| || || || | ||||| |||||||| || Sbjct 59353 GGCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGT 59294 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 59293 CAGGGTCTTGACGAAGATCTGCAT 59270 >seq115 Length=268835 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 || ||| || |||||||| |||| || || || || ||||| || |||||||| ||||| Sbjct 194804 CTACTTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGAT 194863 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| ||| || |||||||||||| |||| || || || | ||||| |||||||| Sbjct 194864 CTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCC 194923 Query 225687 CGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||| | ||||| Sbjct 194924 AGTCAGGGTCTTGACGAAGATCTGCAT 194950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192463787701928