Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq60 111 2e-19 seq88 107 3e-18 >seq60 Length=331869 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | |||||| | || || |||||||| || || || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||| || || |||| |||||| ||| ||| ||||| | ||||| | ||| ||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || ||||||||||| || || ||||| || || |||| || |||||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 || || || ||||| | ||||||||||||| ||||| | || ||||||| || Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 ||| ||| ||||| | |||||||||||| ||||| ||||| | ||||||||| |||| Sbjct 158379 ACTGCATGATATCTGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCAGGTCTCTTAT 158438 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | ||||| ||||| | |||| |||| || || || | |||| | ||| |||| || | Sbjct 158439 TTCCTCCTTGATCCACATATTTGGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGTC 158498 Query 78217 CGTTAGATGTTCCATTTGT 78235 | || || || ||||| || Sbjct 158499 CATTCGAAGTACCATTAGT 158517 >seq88 Length=301248 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 ||||||| ||||| | ||||||||| || ||||| || || | | |||| |||||||||| Sbjct 194411 ACTCCATGATATCTGCATGCCATGGCTCAAGATAGATAGCGAAAGCTCCGGGTCGTTTAT 194470 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | || |||||||||| ||| |||| ||||| || | ||| ||| ||| || | | | Sbjct 194471 TTCCACCCTGATCTACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGCACGAGTC 194530 Query 78217 CGTTAGATGTTCCATTTGT 78235 |||| || |||||||| || Sbjct 194531 CGTTCGAGGTTCCATTCGT 194549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694630489015680