Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq60 120 4e-22 seq88 98.7 1e-15 >seq60 Length=331869 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | |||||| | || || |||||||||||||| || | ||| | | || Sbjct 158815 GTTCCAGAATTAAAAAGAGTGGGGGATGCATGAGTGAAGTATCTCTCACTCATCATATCA 158874 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| || || |||||||||||||| ||| ||||| | ||| || | ||| ||| Sbjct 158875 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATAGCTACTCTCATTAAC 158934 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||||| ||||| ||||| || || |||| || |||||| | |||| | Sbjct 158935 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAAATATGATCTCTCCAGA 158994 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 || || || ||||| | ||||||||||||| ||||| | || | ||||| || Sbjct 158995 GTCTTGAATCCAAAGAAAGAATATGAAAAGTCTCGATCGTACACTATGGCAGAATTGAG 159053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||| ||||| || ||| || || || |||||||| || ||||||||||| | | Sbjct 158154 TCAAATTTTTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACACATCAAAGTC 158213 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||| ||| || ||| | |||||| || |||||||| ||||| || ||| ||| Sbjct 158214 CAATCAGAATCAGTCTCAACTCTTTTCATGAATAGATCAGGAATCCAGAGGGCATAGAAT 158273 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCT---GTATTCTTTTTAAGATCTAGGAA 76692 ||||| || | ||| |||||| | |||| |||||| || ||| | ||||| Sbjct 158274 AGATCGCGAGCTCT---TTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGAGGAA 158326 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 ||| ||| ||||| | |||||||||||| ||||| || || | | || |||| |||| Sbjct 158379 ACTGCATGATATCTGCATGCCATGGTTCGAGATAGATTGCGAATGCTCCAGGTCTCTTAT 158438 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 | ||||| ||||| | |||| ||||||| || || | |||| | ||| |||| || | Sbjct 158439 TTCCTCCTTGATCCACATATTTGGCAGTATTGTTGAATACTCGAAGCATGGGAACAAGTC 158498 Query 76812 CGTTAGATGTACCATTTGT 76830 | || || |||||||| || Sbjct 158499 CATTCGAAGTACCATTAGT 158517 >seq88 Length=301248 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 ||||||| ||||| | ||||||||| || ||||| || || | | | || |||||||||| Sbjct 194411 ACTCCATGATATCTGCATGCCATGGCTCAAGATAGATAGCGAAAGCTCCGGGTCGTTTAT 194470 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 | || |||||||||| ||| |||| ||||| || | ||| ||| ||| || | | | Sbjct 194471 TTCCACCCTGATCTACGTATTTGGCCGTGTTGTTGAACACTTTCAGCATCGGCACGAGTC 194530 Query 76812 CGTTAGATGTACCATTTGT 76830 |||| || || ||||| || Sbjct 194531 CGTTCGAGGTTCCATTCGT 194549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712895081667840