Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq534 96.9 8e-15 seq520 96.9 8e-15 >seq534 Length=97391 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | ||||||||||| | | |||||| ||||| || || || || Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | | |||| || ||| || || || || || || ||||| |||||| Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| ||||||| Sbjct 37493 GTCTTGACGAAGATCTGCATT 37473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | ||||||||||| | | |||||| ||||| || || || || Sbjct 39065 TTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGGATCTT 39006 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| |||| | | |||| || ||| || || || || || || ||||| || Sbjct 39005 AGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGT 38946 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||| ||||| ||||||| ||||||| Sbjct 38945 GAGGGTCTTGACGAAGATCTGCATT 38921 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || ||||| || || || || || ||||||||||| || | | ||| Sbjct 38914 CTGAGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTG 38855 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || |||||||| | ||||||||||| | | ||||| Sbjct 38854 CGGCCATCCTCAAGCTGCTTT--CCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTC 38797 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| || || || || ||||| |||| | | |||| || ||| || || | Sbjct 38796 CCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGA 38737 Query 152062 GAGTAATAGTTTTGCC 152077 | || || || ||||| Sbjct 38736 GGGTGATGGTCTTGCC 38721 >seq520 Length=99801 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| ||||||||||| | | |||||| ||||| || || || || Sbjct 59715 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59656 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || ||||| || || || ||||| || Sbjct 59655 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59596 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 59595 AGGGTCTTGACGAAGATCTGCAT 59573 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| ||||||||||| | | |||||| ||||| || || || || Sbjct 60017 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59958 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || ||||| || || || ||||| || Sbjct 59957 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59898 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 59897 AGGGTCTTGACGAAGATCTGCAT 59875 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| ||||||||||| | | |||||| ||||| || || || || Sbjct 60319 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 60260 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| || ||| || ||||| || || || ||||| || Sbjct 60259 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 60200 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 60199 AGGGTCTTGACGAAGATCTGCAT 60177 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| ||||||||||| | | |||||| ||||| || || || || Sbjct 59412 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59353 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | | || || ||| || ||||| || || || ||||| || Sbjct 59352 GCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59293 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 59292 AGGGTCTTGACGAAGATCTGCAT 59270 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 |||||||||||||| |||||||| || | | |||||| ||||| || || || || Sbjct 59007 CCGGCGAAGATAAGTCTCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCC 58948 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | | |||| ||| ||| || || || || || ||||| || ||||| Sbjct 58947 TTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATGGTTTTTCCGGTGAGC 58888 Query 152085 GTCTTCACGAAGACCTGCAT 152104 || || ||||| | ||||| Sbjct 58887 GTTTTGACGAAAATTTGCAT 58868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153755575952452