Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq534 156 9e-33 seq115 114 3e-20 seq520 105 1e-17 >seq534 Length=97391 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || |||||||| | ||| ||| || |||||||||||||||| ||| |||||| Sbjct 38911 AGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 38852 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || || |||||||| | || |||||| || || |||||| Sbjct 38851 CCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCC 38792 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || |||||||| || || ||| | ||||| ||||| || || ||||| ||||| ||| Sbjct 38791 TTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTG 38732 Query 283062 ATCGTCTTACC 283072 || ||||| || Sbjct 38731 ATGGTCTTGCC 38721 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| | || |||||| || || ||||||||||| |||||||| || Sbjct 37613 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37554 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || || | | Sbjct 37553 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGA 37494 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||||||| Sbjct 37493 GTCTTGACGAAGATCTGCATT 37473 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| | || |||||| || || ||||||||||| |||||||| || Sbjct 37273 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37214 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || ||||| ||||| ||||| |||||||| || | Sbjct 37213 TTGACGTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 37154 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 37153 GTCTTGACGAAGATTTGCAT 37134 >seq115 Length=268835 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || || ||| ||||| ||||||||||| |||||||| Sbjct 194808 TTACCGGCGAAGATGAGTCTCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGGATCTTG 194867 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 194868 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 194927 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 194928 AGGGTCTTGACGAAGATCTGCAT 194950 >seq520 Length=99801 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 59715 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59656 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| || || ||||| ||||| || ||| Sbjct 59655 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59596 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 59595 AGGGTCTTGACGAAGATCTGCAT 59573 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 60017 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59958 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| || || ||||| ||||| || ||| Sbjct 59957 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59898 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 59897 AGGGTCTTGACGAAGATCTGCAT 59875 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 60319 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 60260 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || || ||||| || || ||||| ||||| || ||| Sbjct 60259 GCCTTGACGTTTTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 60200 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 60199 AGGGTCTTGACGAAGATCTGCAT 60177 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| ||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 59412 TTACCGGCGAAGATAAGTCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 59353 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| || || || || ||||| || || ||||| ||||| || ||| Sbjct 59352 GCCTTGACGTTTTCGATGGTATCGGAGGCCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 59293 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| Sbjct 59292 AGGGTCTTGACGAAGATCTGCAT 59270 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || ||||||||||| |||||||| || || ||| | ||||| ||||| ||||| ||| Sbjct 58977 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGCCTCG 58918 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || || || | || || ||||| || ||||| Sbjct 58917 ACCTCGAGGGTGATGGTTTTTCCGGTGAGCGTTTTGACGAAAATTTGCAT 58868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046680029141448