Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq534 93.3 3e-14 >seq534 Length=97391 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| | |||||| || | || | || ||||| ||| ||||| | Sbjct 37273 CCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCC 37214 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | |||||||||| || || ||||| | || || ||||| || ||||| Sbjct 37213 TTGAC-GTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTACCGGTGAG 37155 Query 44317 GGTCTTCACGAAGATTTGCAT-GATG-TG-AATGAAAAT 44352 |||||| |||||||||||||| |||| || ||||| ||| Sbjct 37154 GGTCTTGACGAAGATTTGCATGGATGCTGCAATGAGAAT 37116 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||||| || || ||| ||||| ||||||||||| || Sbjct 38924 CATTCCTCCTCTGAGACGGAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 38865 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| || || |||||||| | |||||| || | Sbjct 38864 AGAAAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCAGG 38805 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| || | | |||| | |||||||||| || | Sbjct 38804 GGGGATTCCCTCCTTATCCTGGATCTT-AGCCTTGACGTTCTCGATGGTGTCGGAGGCCT 38746 Query 44286 CCACCTCCACCGTAATCGTCTTTCC 44310 | ||||| | || || ||||| || Sbjct 38745 CGACCTCGAGGGTGATGGTCTTGCC 38721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 || || ||||| |||||||| | |||||| || | || | || ||||| ||| ||| Sbjct 39067 TGTTTACCGGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGGATC 39008 Query 44252 TTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || ||| | |||| | |||||||||| || || ||||| | || || ||||| || Sbjct 39007 TTAGCCTTGAC-GTTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTGCC 38949 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| |||||||| ||||| Sbjct 38948 AGTGAGGGTCTTGACGAAGATCTGCAT 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359971042866204