Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq520 152 1e-31 seq534 149 2e-30 seq115 113 1e-19 >seq520 Length=99801 Score = 152 bits (168), Expect = 1e-31 Identities = 116/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| |||||||| |||||||||||||| || || ||| Sbjct 58871 CAAATTTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTCGAGGTCGAGGCTTCCGAC 58930 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| Sbjct 58931 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCAGCAG 58990 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||||| Sbjct 58991 AGACTTATCTTCGCCGG 59007 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||| ||| Sbjct 59576 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAC 59635 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 59636 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 59695 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||||| || Sbjct 59696 AGACTTATCTTCGCCGGTAA 59715 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||| ||| Sbjct 59878 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAC 59937 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 59938 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 59997 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||||| || Sbjct 59998 AGACTTATCTTCGCCGGTAA 60017 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||| ||| Sbjct 60180 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAC 60239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 60240 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 60299 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||||| || Sbjct 60300 AGACTTATCTTCGCCGGTAA 60319 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||| || Sbjct 59273 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGGCCTCCGAT 59332 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 59333 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAG 59392 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||||| || Sbjct 59393 AGACTTATCTTCGCCGGTAA 59412 >seq534 Length=97391 Score = 149 bits (164), Expect = 2e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || || |||||||||||||| || ||| |||||||||||||||||||| ||| Sbjct 38721 GGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGACACCATCGAGAACGTCAAGGCTAAG 38780 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 || ||||| || || |||||||| || |||||||| || | |||||||| ||||| ||| Sbjct 38781 ATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAGAGATTGATCTTCGCTGGAAAGCAG 38840 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127 || || ||||| | |||||| | || || ||| |||| || ||||| || || ||||| Sbjct 38841 CTTGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTG 38900 Query 178128 GTTTTGAGACTCAGA 178142 || | | |||||| Sbjct 38901 GTGCTCCGTCTCAGA 38915 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 37137 CAAATCTTCGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 37196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 37197 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 37256 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 37257 AGATTGATCTTCGCCGG 37273 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 37477 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 37536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 37537 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 37596 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 37597 AGATTGATCTTCGCCGG 37613 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 38925 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 38984 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| ||||| || || |||||||| || |||||||| Sbjct 38985 ACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAG 39044 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | ||||||||||| ||||| Sbjct 39045 AGATTGATCTTCGCCGGTAAACA 39067 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || ||| |||||||||||||||||||| Sbjct 37837 ACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGACACCATCGAGAACGTCAAGGCT 37778 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || |||||||| || |||||||| || | ||||||||||| Sbjct 37777 AAGATCCAGGATAAGGAGGGAATCCCCCCTGACCAGCAGAGATTGATCTTCGCCGG 37722 >seq115 Length=268835 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| || ||| ||| Sbjct 194947 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGGCCTCCGAC 194888 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || || || ||||| Sbjct 194887 ACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAGCAG 194828 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||||||||| || Sbjct 194827 AGACTCATCTTCGCCGGTAA 194808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203663154579928