Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq520 86.0 6e-12 seq115 82.4 7e-11 >seq520 Length=99801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| ||||||||||| || || Sbjct 59562 AGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 59503 Query 41705 TCGTCGTCGAGCTGCTTGCC 41724 |||| |||||||||||||| Sbjct 59502 CCGTCCTCGAGCTGCTTGCC 59483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| ||||||||||| || || Sbjct 59864 AGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 59805 Query 41705 TCGTCGTCGAGCTGCTTGCC 41724 |||| |||||||||||||| Sbjct 59804 CCGTCCTCGAGCTGCTTGCC 59785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| ||||||||||| || || Sbjct 60166 AGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 60107 Query 41705 TCGTCGTCGAGCTGCTTGCC 41724 |||| |||||||||||||| Sbjct 60106 CCGTCCTCGAGCTGCTTGCC 60087 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| ||||||||||| || || Sbjct 60469 AGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 60410 Query 41705 TCGTCGTCGAGCTGCTTGCC 41724 |||| |||||||||||||| Sbjct 60409 CCGTCCTCGAGCTGCTTGCC 60390 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| ||||||||||| || || Sbjct 59259 AGACGGAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 59200 Query 41705 TCGTCGTCGAGCTGCTTGCC 41724 |||| ||||||||||| || Sbjct 59199 CCGTCCTCGAGCTGCTTTCC 59180 >seq115 Length=268835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||||||||| ||||| || |||||||||||||| Sbjct 194655 AGACGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGA 194714 Query 41705 TCGTCGTCGAGCTGCTTGCCGGC 41727 | || || ||||||||||| || Sbjct 194715 CCATCCTCAAGCTGCTTGCCTGC 194737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462278503934400