Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6555 98.7 1e-15 >seq6555 Length=16063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||||| ||| || | || || || || || || || || | ||| | | || | Sbjct 13896 GTTCCCGAATTGAAAAGAGTGGGCGATGCATGTGTGAAGTATCTCTCACTCATCATATCG 13837 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| ||||||||| ||| ||||| | || || | ||||||| Sbjct 13836 TATGTCTCTATCGCTGCTTCTATATCCTCCCCATGGATTCCAATCGCTACTCTCATTAAC 13777 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||||||||| || || |||| | || ||||| | || ||| | |||| | Sbjct 13776 ATGTGCTGAGGTCTCTCTACTGTCTTTCCATCCATCTTCAGTAGATATGATCTCTCCAGA 13717 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || || || ||||| | ||| ||||||||||| ||||| | || | || ||||| Sbjct 13716 GTCTTGAATCCAAAGAAAGAGTACGAAAAGTCTCGATCGTACACTATGGCGGAATTGAG 13658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 53669 AAATCAAATTGTCCATC--TATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAA 53725 || |||||| |||||| | || |||||| | | |||||||| || ||||| || Sbjct 14941 AAGTCAAATGATCCATCAGTCTTCACAAACTTAGGAAGAGCAATAGACGCGAGATTGCAC 14882 Query 53726 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 53785 ||||| || |||| ||| || ||||| | ||||||||||| | ||| || ||| Sbjct 14881 ACGGCAACTTCATCGGCAGACGAATATTCAACGATCTCAGTGCATAAATTGGAGCATTTG 14822 Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 || ||||| | ||| ||||||||||||||| || || ||||||| Sbjct 14821 ATCGTTCCAAGATTCTGTTGATTACTCTTTGAATTGCATGCATCCT 14776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| | |||||| || || || ||||| |||||||| | |||||||||| | | Sbjct 14551 TCAAATTTGTCTCCGAAACAATCTTCTAATCCGGGACATTCCTTGGGACACATCAGAGTC 14492 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || || ||| | |||| ||||| || |||||||||||||| ||||| ||| || Sbjct 14491 CAATCAGAATCAGTTTCAACTCTCTTCATGAATAGATCAGGAATCCAGAGAGC-ATAGAA 14433 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 54123 ||||| | | ||| | |||||| ||| |||||| || ||| | |||||| Sbjct 14432 GAGATCGCGAGCTCTTTCTTCCTCTCCTCCAGTATTCATTCGAAGTTGGAGGAA 14379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 54850 ||||||||||| || | ||| |||||||| || |||||||||||||| ||||| | ||| Sbjct 13426 TTGTGTAGATTGGAGATGGCAATTCTAGCAGCAAGAATGGCATAATCGGGATGAAGAGTA 13367 Query 54851 GTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910 || ||||| |||| |||| |||| |||||||||| ||| ||||| || Sbjct 13366 GTCATTCCAGCTGCAGTTTCTGCTGCCAGATTGTCCAATTCACTCGTATCCACTCCTTTG 13307 Query 54911 TATA 54914 |||| Sbjct 13306 TATA 13303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593619494727840