Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9143 114 1e-20 seq9206 113 5e-20 >seq9143 Length=31746 Score = 114 bits (126), Expect = 1e-20 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||||| | || || || |||||| ||||| ||| | || |||||| ||||||| Sbjct 9604 TGGATCGCTGACAAGAAGTCCTCCTTCGCTGAGCGTCTGATCGCTTTCGCGTGCGTCGAG 9545 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| ||||||| |||||| ||||| ||||| || ||||| ||||| | || |||||| Sbjct 9544 GGCATCTTCTTCTCGGGCTCGTTCGCGGCCATCTTCTGGCTGAAGAAGAGAGGACTCATG 9485 Query 117125 CCCGGCCTGACT--TTCAGCAACGAGCTCATCTC 117156 ||||| || ||| ||| ||| ||||||||||| Sbjct 9484 CCCGGACTCACTCATTC--CAATGAGCTCATCTC 9453 >seq9206 Length=19012 Score = 113 bits (124), Expect = 5e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || || ||||||||| |||| ||||| ||| || Sbjct 12807 ATGCAAATTTTCGTCAAAACGCTCACCGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 12748 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 12747 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCA 12689 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| |||| |||| ||| || Sbjct 12688 GCAGAGACTTATCTTCGCTGG 12668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515130595178080